PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
86001-86044 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 59.4595 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D6_15 | tech_badpromoters | * | 96.9697 | 94.1176 | 100.0000 | 51.5152 | 16 | 1 | 16 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | het | 70.0000 | 87.5000 | 58.3333 | 47.8261 | 7 | 1 | 7 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 63.2653 | 33 | 0 | 33 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 52.6316 | 9 | 1 | 9 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 55.1724 | 38 | 1 | 38 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.8462 | 6 | 0 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 59.3750 | 13 | 0 | 13 | 0 | 0 | ||
| cchapple-custom | SNP | tv | tech_badpromoters | * | 96.5228 | 97.2222 | 95.8333 | 57.6471 | 70 | 2 | 69 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | tech_badpromoters | * | 40.0000 | 25.0000 | 100.0000 | 80.0000 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | tech_badpromoters | * | 99.4152 | 100.0000 | 98.8372 | 52.4862 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 58.8235 | 7 | 0 | 7 | 0 | 0 | ||
| cchapple-custom | SNP | tv | tech_badpromoters | het | 95.5224 | 96.9697 | 94.1176 | 64.2105 | 32 | 1 | 32 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 57.1429 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||