PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85601-85650 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | tech_badpromoters | * | 97.5000 | 99.3631 | 95.7055 | 51.6320 | 156 | 1 | 156 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 54.0984 | 77 | 0 | 77 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | SNP | * | tech_badpromoters | homalt | 99.3711 | 98.7500 | 100.0000 | 48.7013 | 79 | 1 | 79 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.6061 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | * | 91.6667 | 84.6154 | 100.0000 | 45.0000 | 11 | 2 | 11 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 45.4545 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | hetalt | 80.0000 | 66.6667 | 100.0000 | 33.3333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 57.1429 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 65.2174 | 7 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | homalt | 94.7368 | 100.0000 | 90.0000 | 47.3684 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | * | 95.5056 | 100.0000 | 91.3978 | 56.9444 | 85 | 0 | 85 | 8 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | het | 92.6316 | 100.0000 | 86.2745 | 57.1429 | 44 | 0 | 44 | 7 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 56.7010 | 41 | 0 | 41 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | tech_badpromoters | * | 81.4815 | 100.0000 | 68.7500 | 56.1644 | 22 | 0 | 22 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | tech_badpromoters | het | 61.5385 | 100.0000 | 44.4444 | 48.5714 | 8 | 0 | 8 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | * | 93.1343 | 99.3631 | 87.6404 | 63.5992 | 156 | 1 | 156 | 22 | 1 | 4.5455 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | het | 89.4118 | 98.7013 | 81.7204 | 64.3678 | 76 | 1 | 76 | 17 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | * | tech_badpromoters | homalt | 96.9697 | 100.0000 | 94.1176 | 62.7193 | 80 | 0 | 80 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | * | 66.6667 | 52.9412 | 90.0000 | 54.5455 | 9 | 8 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | het | 46.1538 | 30.0000 | 100.0000 | 63.6364 | 3 | 7 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | homalt | 83.3333 | 83.3333 | 83.3333 | 45.4545 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | * | 82.9268 | 77.2727 | 89.4737 | 53.6585 | 17 | 5 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | het | 88.8889 | 100.0000 | 80.0000 | 60.0000 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | homalt | 81.8182 | 69.2308 | 100.0000 | 43.7500 | 9 | 4 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | * | 84.8485 | 82.3529 | 87.5000 | 57.8947 | 14 | 3 | 14 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | het | 90.9091 | 100.0000 | 83.3333 | 55.5556 | 10 | 0 | 10 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 63.6364 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||