PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85201-85250 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.8052 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 47.5610 | 43 | 1 | 43 | 0 | 0 | ||
| ckim-gatk | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.2895 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-gatk | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | * | 94.4444 | 89.4737 | 100.0000 | 32.0000 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 41.6667 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | tech_badpromoters | homalt | 94.1176 | 88.8889 | 100.0000 | 27.2727 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | * | 92.9577 | 86.8421 | 100.0000 | 48.4127 | 66 | 10 | 65 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | het | 94.5946 | 89.7436 | 100.0000 | 48.4375 | 35 | 4 | 33 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | * | tech_badpromoters | homalt | 90.0000 | 81.8182 | 100.0000 | 50.9091 | 27 | 6 | 27 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.2683 | 75 | 1 | 75 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 49.3333 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 59.2593 | 33 | 0 | 33 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | * | 68.7500 | 64.7059 | 73.3333 | 53.1250 | 11 | 6 | 11 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | het | 70.5882 | 60.0000 | 85.7143 | 58.8235 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 71.4286 | 83.3333 | 62.5000 | 46.6667 | 5 | 1 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | * | 25.0000 | 15.3846 | 66.6667 | 57.1429 | 2 | 11 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | het | 44.4444 | 28.5714 | 100.0000 | 60.0000 | 2 | 5 | 2 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | ti | tech_badpromoters | * | 86.2240 | 92.9412 | 80.4124 | 43.9306 | 79 | 6 | 78 | 19 | 1 | 5.2632 | |
| ciseli-custom | SNP | ti | tech_badpromoters | het | 79.2079 | 90.9091 | 70.1754 | 39.3617 | 40 | 4 | 40 | 17 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | ti | tech_badpromoters | homalt | 95.0609 | 95.1220 | 95.0000 | 49.3671 | 39 | 2 | 38 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | tech_badpromoters | * | 84.1610 | 97.2222 | 74.1935 | 52.7919 | 70 | 2 | 69 | 24 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | tech_badpromoters | het | 73.5632 | 96.9697 | 59.2593 | 50.0000 | 32 | 1 | 32 | 22 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | tv | tech_badpromoters | homalt | 96.1368 | 97.4359 | 94.8718 | 56.1798 | 38 | 1 | 37 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | * | 52.1739 | 54.5455 | 50.0000 | 52.0000 | 12 | 10 | 12 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | het | 50.0000 | 75.0000 | 37.5000 | 55.5556 | 6 | 2 | 6 | 10 | 7 | 70.0000 | |