PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82451-82500 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D6_15 | segdup | * | 95.4424 | 93.1937 | 97.8022 | 92.3817 | 178 | 13 | 178 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | segdup | het | 96.6292 | 93.4783 | 100.0000 | 93.7591 | 86 | 6 | 86 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 88.8298 | 42 | 7 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 91.4961 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D1_5 | segdup | * | 99.6373 | 99.5467 | 99.7280 | 94.0940 | 1098 | 5 | 1100 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | het | 99.6380 | 99.4220 | 99.8551 | 93.9785 | 688 | 4 | 689 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 94.9219 | 51 | 1 | 52 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.1708 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | segdup | * | 99.0001 | 98.7480 | 99.2534 | 93.8102 | 2524 | 32 | 2526 | 19 | 11 | 57.8947 | |
| raldana-dualsentieon | INDEL | * | segdup | het | 99.0763 | 98.7722 | 99.3823 | 94.1484 | 1448 | 18 | 1448 | 9 | 2 | 22.2222 | |
| raldana-dualsentieon | INDEL | * | segdup | hetalt | 96.0000 | 92.3077 | 100.0000 | 93.7787 | 120 | 10 | 122 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | segdup | homalt | 99.2731 | 99.5833 | 98.9648 | 93.2239 | 956 | 4 | 956 | 10 | 9 | 90.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 94.2238 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 24 | 0 | 24 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6387 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 93.2432 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | * | 94.0171 | 94.8276 | 93.2203 | 95.0545 | 55 | 3 | 55 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | het | 93.2216 | 97.2973 | 89.4737 | 95.2736 | 36 | 1 | 34 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 91.8919 | 7 | 2 | 9 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.6835 | 12 | 0 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | segdup | * | 91.9403 | 88.0000 | 96.2500 | 90.6268 | 154 | 21 | 154 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | segdup | het | 94.0117 | 93.9759 | 94.0476 | 91.1765 | 78 | 5 | 79 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | segdup | hetalt | 81.5789 | 68.8889 | 100.0000 | 87.8906 | 31 | 14 | 31 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | segdup | homalt | 96.7505 | 95.7447 | 97.7778 | 90.9820 | 45 | 2 | 44 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | * | 97.8664 | 97.7308 | 98.0024 | 98.7178 | 2498 | 58 | 2502 | 51 | 37 | 72.5490 | |
| ndellapenna-hhga | INDEL | * | segdup | het | 97.9748 | 98.6357 | 97.3226 | 94.1248 | 1446 | 20 | 1454 | 40 | 27 | 67.5000 | |
| ndellapenna-hhga | INDEL | * | segdup | hetalt | 85.5736 | 75.3846 | 98.9474 | 95.6039 | 98 | 32 | 94 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | homalt | 99.1684 | 99.3750 | 98.9627 | 93.3714 | 954 | 6 | 954 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | segdup | * | 97.8523 | 97.1988 | 98.5147 | 87.3016 | 8293 | 239 | 8291 | 125 | 50 | 40.0000 | |
| mlin-fermikit | SNP | tv | segdup | het | 97.5120 | 96.3685 | 98.6829 | 87.0738 | 5095 | 192 | 5095 | 68 | 1 | 1.4706 | |
| mlin-fermikit | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 7 | 0 | 7 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | segdup | homalt | 98.3960 | 98.5485 | 98.2440 | 87.6277 | 3191 | 47 | 3189 | 57 | 49 | 85.9649 | |
| mlin-fermikit | INDEL | I1_5 | segdup | * | 96.3512 | 94.8064 | 97.9472 | 92.1265 | 1004 | 55 | 1002 | 21 | 17 | 80.9524 | |
| mlin-fermikit | INDEL | I1_5 | segdup | het | 95.8561 | 94.7955 | 96.9407 | 92.6504 | 510 | 28 | 507 | 16 | 12 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | segdup | hetalt | 84.3373 | 72.9167 | 100.0000 | 94.9791 | 35 | 13 | 36 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | segdup | homalt | 97.9723 | 97.0402 | 98.9224 | 91.0078 | 459 | 14 | 459 | 5 | 5 | 100.0000 | |