PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82301-82350 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | segdup | * | 98.3734 | 98.6401 | 98.1081 | 95.0976 | 1088 | 15 | 1089 | 21 | 6 | 28.5714 | |
| qzeng-custom | INDEL | D1_5 | segdup | het | 98.1482 | 98.6994 | 97.6032 | 95.6595 | 683 | 9 | 733 | 18 | 4 | 22.2222 | |
| qzeng-custom | INDEL | D1_5 | segdup | hetalt | 92.3077 | 100.0000 | 48 | 4 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | segdup | homalt | 99.3034 | 99.4429 | 99.1643 | 93.1723 | 357 | 2 | 356 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | D6_15 | segdup | * | 89.7775 | 93.1937 | 86.6029 | 93.7519 | 178 | 13 | 181 | 28 | 9 | 32.1429 | |
| qzeng-custom | INDEL | D6_15 | segdup | het | 90.2081 | 95.6522 | 85.3503 | 94.2743 | 88 | 4 | 134 | 23 | 6 | 26.0870 | |
| qzeng-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 81.6327 | 0.0000 | 0.0000 | 40 | 9 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | segdup | homalt | 94.9495 | 100.0000 | 90.3846 | 91.3765 | 50 | 0 | 47 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I6_15 | segdup | * | 89.9918 | 90.8571 | 89.1429 | 92.6931 | 159 | 16 | 156 | 19 | 4 | 21.0526 | |
| qzeng-custom | INDEL | I6_15 | segdup | het | 91.8575 | 96.3855 | 87.7358 | 93.5009 | 80 | 3 | 93 | 13 | 2 | 15.3846 | |
| qzeng-custom | INDEL | I6_15 | segdup | hetalt | 86.0759 | 75.5556 | 100.0000 | 90.9091 | 34 | 11 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | segdup | homalt | 91.5760 | 95.7447 | 87.7551 | 90.9926 | 45 | 2 | 43 | 6 | 2 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | * | 90.7237 | 86.9110 | 94.8864 | 93.3635 | 166 | 25 | 167 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | het | 94.7959 | 96.7391 | 92.9293 | 94.1351 | 89 | 3 | 92 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | hetalt | 71.0526 | 55.1020 | 100.0000 | 90.5303 | 27 | 22 | 25 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | segdup | homalt | 98.0392 | 100.0000 | 96.1538 | 92.5714 | 50 | 0 | 50 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | * | 93.1619 | 93.1034 | 93.2203 | 93.1949 | 54 | 4 | 55 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 93.1667 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | hetalt | 71.4286 | 55.5556 | 100.0000 | 91.9355 | 5 | 4 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.6585 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | * | 97.6439 | 97.6428 | 97.6449 | 94.0680 | 1077 | 26 | 1078 | 26 | 21 | 80.7692 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | het | 98.0825 | 99.4220 | 96.7787 | 93.6753 | 688 | 4 | 691 | 23 | 18 | 78.2609 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | hetalt | 73.7490 | 59.6154 | 96.6667 | 97.0385 | 31 | 21 | 29 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | homalt | 99.5828 | 99.7214 | 99.4444 | 94.2939 | 358 | 1 | 358 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | * | 98.8658 | 98.7724 | 98.9593 | 94.1605 | 1046 | 13 | 1046 | 11 | 7 | 63.6364 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | het | 98.4089 | 97.7695 | 99.0566 | 94.8166 | 526 | 12 | 525 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | hetalt | 98.9899 | 100.0000 | 98.0000 | 96.1774 | 48 | 0 | 49 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | homalt | 99.3684 | 99.7886 | 98.9518 | 92.7375 | 472 | 1 | 472 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | segdup | * | 98.5507 | 97.1429 | 100.0000 | 91.9469 | 170 | 5 | 170 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 92.8007 | 82 | 1 | 82 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 90.0227 | 44 | 1 | 44 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | segdup | homalt | 96.7033 | 93.6170 | 100.0000 | 91.7137 | 44 | 3 | 44 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | segdup | * | 99.5371 | 99.5903 | 99.4839 | 89.2221 | 27952 | 115 | 27952 | 145 | 51 | 35.1724 | |
| ndellapenna-hhga | SNP | * | segdup | het | 99.4196 | 99.4052 | 99.4339 | 89.3885 | 17214 | 103 | 17214 | 98 | 4 | 4.0816 | |
| ndellapenna-hhga | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7564 | 7 | 0 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | segdup | homalt | 99.7258 | 99.8883 | 99.5639 | 88.9154 | 10731 | 12 | 10731 | 47 | 47 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | * | 96.8855 | 97.8723 | 95.9184 | 93.9431 | 46 | 1 | 47 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | het | 96.2963 | 100.0000 | 92.8571 | 94.2505 | 24 | 0 | 26 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 4 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 91.8182 | 18 | 1 | 18 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C6_15 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 99.4792 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 99.3506 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C6_15 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | segdup | * | 96.6734 | 97.6526 | 95.7138 | 94.7770 | 2496 | 60 | 2568 | 115 | 34 | 29.5652 | |
| qzeng-custom | INDEL | * | segdup | het | 96.2903 | 97.8854 | 94.7463 | 95.5784 | 1435 | 31 | 1587 | 88 | 19 | 21.5909 | |