PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82201-82250 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | I1_5 | segdup | * | 99.1501 | 99.0557 | 99.2446 | 94.4523 | 1049 | 10 | 1051 | 8 | 2 | 25.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | segdup | het | 98.9797 | 99.0706 | 98.8889 | 95.3384 | 533 | 5 | 534 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.2046 | 45 | 3 | 46 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.4837 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.9541 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | het | 94.5946 | 100.0000 | 89.7436 | 96.2998 | 37 | 0 | 35 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.0233 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdup | * | 99.5010 | 99.3654 | 99.6370 | 94.5866 | 1096 | 7 | 1098 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | het | 99.3497 | 99.2775 | 99.4220 | 94.7071 | 687 | 5 | 688 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6780 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 359 | 0 | 359 | 0 | 0 | ||
| jli-custom | SNP | * | segdup | homalt | 99.9023 | 99.8976 | 99.9069 | 88.0536 | 10732 | 11 | 10732 | 10 | 10 | 100.0000 | |
| jli-custom | SNP | ti | segdup | * | 99.6094 | 99.8669 | 99.3533 | 88.6519 | 19511 | 26 | 19511 | 127 | 6 | 4.7244 | |
| jli-custom | SNP | ti | segdup | het | 99.4165 | 99.8504 | 98.9864 | 89.3080 | 12012 | 18 | 12012 | 123 | 2 | 1.6260 | |
| jli-custom | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | SNP | ti | segdup | homalt | 99.9200 | 99.8934 | 99.9467 | 87.3710 | 7497 | 8 | 7497 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | * | segdup | * | 96.3424 | 98.8654 | 93.9450 | 95.7742 | 2527 | 29 | 2529 | 163 | 11 | 6.7485 | |
| jmaeng-gatk | INDEL | * | segdup | het | 94.5277 | 98.9768 | 90.4613 | 96.5263 | 1451 | 15 | 1451 | 153 | 2 | 1.3072 | |
| jmaeng-gatk | INDEL | * | segdup | hetalt | 95.1613 | 90.7692 | 100.0000 | 94.5726 | 118 | 12 | 120 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | segdup | homalt | 99.3776 | 99.7917 | 98.9669 | 93.6806 | 958 | 2 | 958 | 10 | 9 | 90.0000 | |
| jmaeng-gatk | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jmaeng-gatk | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | I6_15 | segdup | * | 98.5507 | 97.1429 | 100.0000 | 91.7715 | 170 | 5 | 170 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | het | 98.7805 | 97.5904 | 100.0000 | 92.5346 | 81 | 2 | 81 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | hetalt | 97.7273 | 95.5556 | 100.0000 | 90.0693 | 43 | 2 | 43 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 91.6058 | 46 | 1 | 46 | 0 | 0 | ||
| jli-custom | SNP | * | segdup | * | 99.5966 | 99.8397 | 99.3547 | 89.2512 | 28022 | 45 | 28022 | 182 | 12 | 6.5934 | |
| jli-custom | SNP | * | segdup | het | 99.4076 | 99.8037 | 99.0146 | 89.8653 | 17283 | 34 | 17283 | 172 | 2 | 1.1628 | |
| jli-custom | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | SNP | tv | segdup | * | 99.5673 | 99.7773 | 99.3581 | 90.4270 | 8513 | 19 | 8513 | 55 | 6 | 10.9091 | |
| jli-custom | SNP | tv | segdup | het | 99.3872 | 99.6974 | 99.0789 | 90.9422 | 5271 | 16 | 5271 | 49 | 0 | 0.0000 | |
| jli-custom | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | SNP | tv | segdup | homalt | 99.8611 | 99.9074 | 99.8149 | 89.3818 | 3235 | 3 | 3235 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 93.7419 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 93.6842 | 24 | 0 | 24 | 0 | 0 | ||