PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8151-8200 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I16_PLUS | HG002compoundhet | hetalt | 79.5048 | 66.7941 | 98.1900 | 36.1641 | 1398 | 695 | 1085 | 20 | 16 | 80.0000 | |
| qzeng-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 5.3812 | 100.0000 | 2.7650 | 59.0566 | 3 | 0 | 6 | 211 | 173 | 81.9905 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | * | 82.4804 | 75.6151 | 90.7168 | 64.6037 | 9343 | 3013 | 9391 | 961 | 822 | 85.5359 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | het | 92.1803 | 94.9412 | 89.5755 | 66.2595 | 807 | 43 | 5740 | 668 | 571 | 85.4790 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 84.6325 | 73.4723 | 99.7902 | 54.7416 | 8212 | 2965 | 3329 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | homalt | 68.8793 | 98.4802 | 52.9605 | 78.9109 | 324 | 5 | 322 | 286 | 246 | 86.0140 | |
| qzeng-custom | SNP | ti | HG002compoundhet | * | 98.4045 | 98.1577 | 98.6526 | 40.8633 | 17156 | 322 | 17719 | 242 | 86 | 35.5372 | |
| qzeng-custom | SNP | ti | HG002compoundhet | het | 98.0838 | 97.7380 | 98.4320 | 42.6883 | 9290 | 215 | 11739 | 187 | 45 | 24.0642 | |
| qzeng-custom | SNP | ti | HG002compoundhet | hetalt | 98.4211 | 96.8912 | 100.0000 | 21.9547 | 561 | 18 | 551 | 0 | 0 | ||
| qzeng-custom | SNP | ti | HG002compoundhet | homalt | 98.8966 | 98.7963 | 98.9971 | 38.0829 | 7305 | 89 | 5429 | 55 | 41 | 74.5455 | |
| qzeng-custom | INDEL | D6_15 | HG002compoundhet | * | 81.7565 | 82.9255 | 80.6200 | 31.3934 | 7489 | 1542 | 8582 | 2063 | 963 | 46.6796 | |
| qzeng-custom | INDEL | D6_15 | HG002compoundhet | het | 88.1260 | 94.5093 | 82.5504 | 31.0108 | 809 | 47 | 8558 | 1809 | 764 | 42.2333 | |
| qzeng-custom | INDEL | D6_15 | HG002compoundhet | hetalt | 81.6710 | 100.0000 | 6657 | 1494 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | HG002compoundhet | homalt | 15.8393 | 95.8333 | 8.6331 | 43.0328 | 23 | 1 | 24 | 254 | 199 | 78.3465 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | * | 92.3506 | 90.1368 | 94.6759 | 61.0439 | 27005 | 2955 | 26887 | 1512 | 1502 | 99.3386 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | het | 83.9323 | 82.2912 | 85.6402 | 78.9688 | 3369 | 725 | 3137 | 526 | 520 | 98.8593 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | hetalt | 95.3715 | 91.1597 | 99.9913 | 50.4712 | 22954 | 2226 | 23068 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | homalt | 57.9932 | 99.4169 | 40.9364 | 81.2893 | 682 | 4 | 682 | 984 | 980 | 99.5935 | |
| qzeng-custom | SNP | * | HG002compoundhet | * | 98.2824 | 98.1489 | 98.4164 | 46.9711 | 25344 | 478 | 25604 | 412 | 148 | 35.9223 | |
| qzeng-custom | SNP | * | HG002compoundhet | het | 97.8777 | 97.6372 | 98.1193 | 49.7459 | 13843 | 335 | 16591 | 318 | 73 | 22.9560 | |
| qzeng-custom | SNP | * | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | HG002compoundhet | homalt | 98.8868 | 98.8963 | 98.8772 | 42.3069 | 10663 | 119 | 8190 | 93 | 74 | 79.5699 | |
| jpowers-varprowl | SNP | * | HG002compoundhet | * | 90.5976 | 92.3941 | 88.8696 | 48.7204 | 23858 | 1964 | 24057 | 3013 | 2048 | 67.9721 | |
| jpowers-varprowl | SNP | * | HG002compoundhet | het | 94.4520 | 92.3614 | 96.6395 | 53.1760 | 13095 | 1083 | 13286 | 462 | 40 | 8.6580 | |
| jpowers-varprowl | SNP | * | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 862 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | HG002compoundhet | homalt | 89.3414 | 99.8238 | 80.8512 | 43.1364 | 10763 | 19 | 10771 | 2551 | 2008 | 78.7142 | |
| ltrigg-rtg1 | INDEL | * | HG002compoundhet | * | 95.1229 | 91.7957 | 98.7003 | 59.4533 | 27502 | 2458 | 27566 | 363 | 303 | 83.4711 | |
| ltrigg-rtg1 | INDEL | * | HG002compoundhet | het | 96.0922 | 95.0904 | 97.1154 | 68.4751 | 3893 | 201 | 3939 | 117 | 62 | 52.9915 | |
| ltrigg-rtg1 | INDEL | * | HG002compoundhet | hetalt | 95.2514 | 91.2113 | 99.6659 | 56.7239 | 22967 | 2213 | 22971 | 77 | 76 | 98.7013 | |
| ltrigg-rtg1 | INDEL | * | HG002compoundhet | homalt | 85.9787 | 93.5860 | 79.5152 | 70.0762 | 642 | 44 | 656 | 169 | 165 | 97.6331 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 87.5000 | 88.7324 | 0 | 0 | 28 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | * | 2.5440 | 1.9257 | 3.7472 | 39.3654 | 169 | 8607 | 169 | 4341 | 4310 | 99.2859 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | het | 6.7114 | 57.6923 | 3.5629 | 37.9971 | 120 | 88 | 150 | 4060 | 4050 | 99.7537 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 0.3514 | 0.0000 | 0.0000 | 30 | 8507 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | homalt | 11.4804 | 61.2903 | 6.3333 | 53.7037 | 19 | 12 | 19 | 281 | 260 | 92.5267 | |
| jpowers-varprowl | SNP | tv | HG002compoundhet | * | 83.9956 | 84.7697 | 83.2355 | 57.3909 | 7564 | 1359 | 7661 | 1543 | 1144 | 74.1413 | |
| jpowers-varprowl | SNP | tv | HG002compoundhet | het | 92.4509 | 89.4714 | 95.6356 | 62.4569 | 4181 | 492 | 4273 | 195 | 18 | 9.2308 | |
| jpowers-varprowl | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 862 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | HG002compoundhet | homalt | 83.3558 | 99.8524 | 71.5372 | 51.1753 | 3383 | 5 | 3388 | 1348 | 1126 | 83.5312 | |
| jpowers-varprowl | INDEL | I1_5 | HG002compoundhet | * | 10.3239 | 8.1742 | 14.0078 | 68.9924 | 1010 | 11346 | 1001 | 6145 | 6014 | 97.8682 | |
| jpowers-varprowl | INDEL | I1_5 | HG002compoundhet | het | 20.5402 | 73.6471 | 11.9344 | 70.4320 | 626 | 224 | 691 | 5099 | 5074 | 99.5097 | |
| jpowers-varprowl | INDEL | I1_5 | HG002compoundhet | hetalt | 0.0000 | 0.6710 | 0.0000 | 0.0000 | 75 | 11102 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | HG002compoundhet | homalt | 36.7720 | 93.9210 | 22.8614 | 60.8545 | 309 | 20 | 310 | 1046 | 940 | 89.8662 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 60.0000 | 90.3846 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 96.1538 | 88.0184 | 0 | 0 | 25 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 100.0000 | 93.1966 | 1 | 0 | 146 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 100.0000 | 95.5414 | 0 | 0 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7545 | 1 | 0 | 126 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 100.0000 | 93.5484 | 0 | 0 | 6 | 0 | 0 | ||