PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81701-81750 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | * | segdup | * | 98.9280 | 99.4656 | 98.3963 | 91.8876 | 27917 | 150 | 27917 | 455 | 30 | 6.5934 | |
| gduggal-bwafb | SNP | * | segdup | het | 98.4151 | 99.3244 | 97.5223 | 92.8812 | 17200 | 117 | 17200 | 437 | 12 | 2.7460 | |
| gduggal-bwafb | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1579 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | segdup | homalt | 99.7625 | 99.6928 | 99.8322 | 89.4414 | 10710 | 33 | 10710 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | * | 98.1968 | 97.6393 | 98.7607 | 94.3611 | 1034 | 25 | 1036 | 13 | 6 | 46.1538 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | het | 97.5959 | 96.6543 | 98.5560 | 94.9814 | 520 | 18 | 546 | 8 | 1 | 12.5000 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | hetalt | 92.2122 | 89.5833 | 95.0000 | 97.6771 | 43 | 5 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | homalt | 99.3671 | 99.5772 | 99.1579 | 92.9136 | 471 | 2 | 471 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | * | 86.0819 | 79.3103 | 94.1176 | 91.1917 | 46 | 12 | 48 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | het | 87.4904 | 81.0811 | 95.0000 | 89.3899 | 30 | 7 | 38 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | hetalt | 66.6667 | 100.0000 | 6 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | segdup | homalt | 86.9565 | 83.3333 | 90.9091 | 94.1489 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | * | 72.7273 | 59.5745 | 93.3333 | 85.9155 | 28 | 19 | 28 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | het | 55.8376 | 41.6667 | 84.6154 | 86.8687 | 10 | 14 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | segdup | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 2 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | segdup | homalt | 91.4286 | 84.2105 | 100.0000 | 82.0225 | 16 | 3 | 16 | 0 | 0 | ||
| gduggal-bwafb | INDEL | C1_5 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I6_15 | segdup | * | 81.1709 | 76.0000 | 87.0968 | 88.6197 | 133 | 42 | 135 | 20 | 20 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | het | 92.1647 | 91.5663 | 92.7711 | 88.6612 | 76 | 7 | 77 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | hetalt | 47.4576 | 31.1111 | 100.0000 | 91.1243 | 14 | 31 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | segdup | homalt | 82.6923 | 91.4894 | 75.4386 | 87.6356 | 43 | 4 | 43 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdup | * | 97.0429 | 99.8476 | 94.3914 | 91.6933 | 8519 | 13 | 8398 | 499 | 11 | 2.2044 | |
| eyeh-varpipe | SNP | tv | segdup | het | 95.3870 | 99.8298 | 91.3228 | 92.1659 | 5278 | 9 | 5178 | 492 | 4 | 0.8130 | |
| eyeh-varpipe | SNP | tv | segdup | hetalt | 98.8764 | 100.0000 | 97.7778 | 95.6438 | 7 | 0 | 44 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdup | homalt | 99.8439 | 99.8765 | 99.8114 | 90.5570 | 3234 | 4 | 3176 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | SNP | * | segdup | * | 98.2314 | 99.8753 | 96.6407 | 90.4939 | 28032 | 35 | 27387 | 952 | 22 | 2.3109 | |
| eyeh-varpipe | SNP | * | segdup | het | 97.2199 | 99.8383 | 94.7354 | 91.1282 | 17289 | 28 | 16861 | 937 | 7 | 0.7471 | |
| eyeh-varpipe | SNP | * | segdup | hetalt | 99.3197 | 100.0000 | 98.6486 | 95.3371 | 7 | 0 | 73 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | segdup | homalt | 99.9005 | 99.9348 | 99.8662 | 89.0870 | 10736 | 7 | 10453 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | SNP | ti | segdup | * | 98.6842 | 99.8874 | 97.5096 | 89.9888 | 19515 | 22 | 19225 | 491 | 13 | 2.6477 | |
| eyeh-varpipe | SNP | ti | segdup | het | 97.9291 | 99.8421 | 96.0882 | 90.6738 | 12011 | 19 | 11815 | 481 | 3 | 0.6237 | |
| eyeh-varpipe | SNP | ti | segdup | hetalt | 99.1597 | 100.0000 | 98.3333 | 95.5390 | 2 | 0 | 59 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | segdup | homalt | 99.9189 | 99.9600 | 99.8777 | 88.4551 | 7502 | 3 | 7351 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | segdup | * | 97.4038 | 96.1659 | 98.6739 | 94.2256 | 2458 | 98 | 2530 | 34 | 21 | 61.7647 | |
| gduggal-bwafb | INDEL | * | segdup | het | 96.9413 | 95.2251 | 98.7204 | 94.3651 | 1396 | 70 | 1543 | 20 | 8 | 40.0000 | |
| gduggal-bwafb | INDEL | * | segdup | hetalt | 91.3096 | 87.6923 | 95.2381 | 96.9828 | 114 | 16 | 40 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | * | segdup | homalt | 98.7493 | 98.7500 | 98.7487 | 93.7209 | 948 | 12 | 947 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | D6_15 | segdup | * | 84.6900 | 76.4398 | 94.9367 | 90.2107 | 146 | 45 | 150 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | het | 82.4566 | 71.7391 | 96.9388 | 89.5075 | 66 | 26 | 95 | 3 | 3 | 100.0000 | |