PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1630 1631 1632 1633 1634 1635 1636 1637 1638 ... 1720 1721 » 81651-81700 / 86044 show all
gduggal-bwaplat	INDEL	C6_15	segdup	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwaplat	INDEL	C6_15	segdup	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwavard	INDEL	I6_15	segdup	*	68.6994	65.1429	72.6667	92.8605	114	61	109	41	40	97.5610
gduggal-bwavard	INDEL	I6_15	segdup	het	78.4212	97.5904	65.5462	93.4795	81	2	78	41	40	97.5610
gduggal-bwavard	INDEL	I6_15	segdup	hetalt		0.0000	0.0000	0.0000	0	45	0	0	0
gduggal-bwavard	INDEL	I6_15	segdup	homalt	82.5000	70.2128	100.0000	88.7681	33	14	31	0	0
gduggal-snapfb	INDEL	C1_5	segdup	*		0.0000		100.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C1_5	segdup	het		0.0000		100.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C1_5	segdup	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C1_5	segdup	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwavard	SNP	*	segdup	*	98.3638	97.5737	99.1668	93.3246	27386	681	27135	228	70	30.7018
gduggal-bwavard	SNP	*	segdup	het	98.1974	97.4649	98.9410	94.6418	16878	439	16724	179	23	12.8492
gduggal-bwavard	SNP	*	segdup	hetalt		0.0000	0.0000	0.0000	0	7	0	0	0
gduggal-bwavard	SNP	*	segdup	homalt	98.6646	97.8125	99.5315	88.9251	10508	235	10411	49	47	95.9184
gduggal-bwavard	SNP	ti	segdup	*	98.4790	97.7325	99.2369	92.8031	19094	443	18987	146	43	29.4521
gduggal-bwavard	SNP	ti	segdup	het	98.3107	97.6060	99.0256	94.1945	11742	288	11687	115	13	11.3043
gduggal-bwavard	SNP	ti	segdup	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-bwavard	SNP	ti	segdup	homalt	98.7626	97.9614	99.5771	88.2815	7352	153	7300	31	30	96.7742
gduggal-bwavard	SNP	tv	segdup	*	98.0164	97.1871	98.8601	94.3820	8292	240	8239	95	34	35.7895
gduggal-bwavard	SNP	tv	segdup	het	97.8517	97.1439	98.5698	95.5379	5136	151	5100	74	15	20.2703
gduggal-bwavard	SNP	tv	segdup	hetalt		0.0000	0.0000	0.0000	0	7	0	0	0
gduggal-bwavard	SNP	tv	segdup	homalt	98.3926	97.4676	99.3354	90.2442	3156	82	3139	21	19	90.4762
gduggal-snapfb	INDEL	C16_PLUS	segdup	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C16_PLUS	segdup	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C16_PLUS	segdup	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C16_PLUS	segdup	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C6_15	segdup	*		0.0000		100.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C6_15	segdup	het		0.0000		100.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C6_15	segdup	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapfb	INDEL	C6_15	segdup	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapfb	INDEL	*	segdup	*	93.0343	91.0407	95.1171	94.2770	2327	229	2396	123	43	34.9593
gduggal-snapfb	INDEL	*	segdup	het	92.4787	90.9277	94.0836	94.1056	1333	133	1463	92	26	28.2609
gduggal-snapfb	INDEL	*	segdup	hetalt	81.3718	74.6154	89.4737	97.2915	97	33	34	4	2	50.0000
gduggal-snapfb	INDEL	*	segdup	homalt	95.2260	93.4375	97.0842	94.2949	897	63	899	27	15	55.5556
gduggal-bwafb	INDEL	D1_5	segdup	*	99.0456	98.6401	99.4545	94.8352	1088	15	1094	6	1	16.6667
gduggal-bwafb	INDEL	D1_5	segdup	het	98.9321	98.5549	99.3122	94.6465	682	10	722	5	0	0.0000
gduggal-bwafb	INDEL	D1_5	segdup	hetalt	94.1742	94.2308	94.1176	97.6902	49	3	16	1	1	100.0000
gduggal-bwafb	INDEL	D1_5	segdup	homalt	99.7207	99.4429	100.0000	94.9012	357	2	356	0	0
gduggal-bwafb	INDEL	D6_15	segdup	*	92.1680	88.4817	96.1749	92.8987	169	22	176	7	7	100.0000
gduggal-bwafb	INDEL	D6_15	segdup	het	92.0280	85.8696	99.1379	92.8439	79	13	115	1	1	100.0000
gduggal-bwafb	INDEL	D6_15	segdup	hetalt	89.8876	81.6327	100.0000	90.3509	40	9	11	0	0
gduggal-bwafb	INDEL	D6_15	segdup	homalt	94.3396	100.0000	89.2857	93.3492	50	0	50	6	6	100.0000
gduggal-bwafb	INDEL	I6_15	segdup	*	94.3926	90.8571	98.2143	89.2994	159	16	165	3	3	100.0000
gduggal-bwafb	INDEL	I6_15	segdup	het	94.1316	90.3614	98.2301	88.6089	75	8	111	2	2	100.0000
gduggal-bwafb	INDEL	I6_15	segdup	hetalt	89.8876	88.8889	90.9091	91.2000	40	5	10	1	1	100.0000
gduggal-bwafb	INDEL	I6_15	segdup	homalt	96.7033	93.6170	100.0000	90.2870	44	3	44	0	0
gduggal-bwafb	SNP	ti	segdup	*	99.0195	99.5086	98.5352	91.2837	19441	96	19441	289	16	5.5363
gduggal-bwafb	SNP	ti	segdup	het	98.5285	99.3516	97.7189	92.3400	11952	78	11952	279	6	2.1505
gduggal-bwafb	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	99.1736	2	0	2	0	0
gduggal-bwafb	SNP	ti	segdup	homalt	99.8134	99.7602	99.8666	88.7165	7487	18	7487	10	10	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge