PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81551-81600 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.3311 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | segdup | homalt | 99.4577 | 98.9740 | 99.9462 | 87.6674 | 7428 | 77 | 7428 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | * | 96.0650 | 98.9613 | 93.3333 | 95.5900 | 1048 | 11 | 1050 | 75 | 3 | 4.0000 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | het | 93.2743 | 99.0706 | 88.1188 | 96.5876 | 533 | 5 | 534 | 72 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | segdup | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9750 | 44 | 4 | 45 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | segdup | homalt | 99.4720 | 99.5772 | 99.3671 | 92.8539 | 471 | 2 | 471 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | segdup | * | 99.2028 | 99.6980 | 98.7126 | 86.7471 | 19478 | 59 | 19475 | 254 | 32 | 12.5984 | |
| ltrigg-rtg2 | SNP | ti | segdup | het | 98.8445 | 99.5262 | 98.1721 | 86.1250 | 11973 | 57 | 11977 | 223 | 1 | 0.4484 | |
| ltrigg-rtg2 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | segdup | homalt | 99.7804 | 99.9734 | 99.5881 | 87.6176 | 7503 | 2 | 7496 | 31 | 31 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | segdup | * | 99.4540 | 99.1840 | 99.7255 | 92.9516 | 1094 | 9 | 1090 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | segdup | het | 99.2017 | 98.8439 | 99.5620 | 92.4343 | 684 | 8 | 682 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1705 | 52 | 0 | 53 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | segdup | homalt | 99.8605 | 99.7214 | 100.0000 | 92.9966 | 358 | 1 | 355 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | segdup | * | 99.1371 | 99.6722 | 98.6078 | 87.3153 | 27975 | 92 | 27977 | 395 | 53 | 13.4177 | |
| ltrigg-rtg2 | SNP | * | segdup | het | 98.7596 | 99.4918 | 98.0380 | 86.6405 | 17229 | 88 | 17239 | 345 | 3 | 0.8696 | |
| ltrigg-rtg2 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8037 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | segdup | homalt | 99.7490 | 99.9628 | 99.5362 | 88.2598 | 10739 | 4 | 10731 | 50 | 50 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | * | 95.5556 | 91.4894 | 100.0000 | 89.7375 | 43 | 4 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | het | 95.6522 | 91.6667 | 100.0000 | 88.0208 | 22 | 2 | 23 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 97.1698 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 85.9504 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | segdup | * | 99.1958 | 99.4334 | 98.9593 | 93.1346 | 1053 | 6 | 1046 | 11 | 3 | 27.2727 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | het | 98.6887 | 98.8848 | 98.4934 | 93.5006 | 532 | 6 | 523 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8447 | 48 | 0 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | segdup | homalt | 99.6825 | 100.0000 | 99.3671 | 91.5023 | 473 | 0 | 471 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | segdup | * | 98.9872 | 99.6132 | 98.3690 | 88.4663 | 8499 | 33 | 8504 | 141 | 21 | 14.8936 | |
| ltrigg-rtg2 | SNP | tv | segdup | het | 98.5667 | 99.4137 | 97.7340 | 87.6779 | 5256 | 31 | 5262 | 122 | 2 | 1.6393 | |
| ltrigg-rtg2 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8037 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.5171 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | segdup | * | 98.5505 | 97.7143 | 99.4012 | 90.2624 | 171 | 4 | 166 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 90.0383 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5058 | 45 | 0 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 89.1304 | 45 | 2 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | segdup | * | 97.8692 | 96.8586 | 98.9011 | 91.2793 | 185 | 6 | 180 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | segdup | het | 97.7502 | 97.8261 | 97.6744 | 92.4495 | 90 | 2 | 84 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | segdup | hetalt | 96.8421 | 93.8776 | 100.0000 | 90.1468 | 46 | 3 | 47 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | segdup | homalt | 98.9899 | 98.0000 | 100.0000 | 89.5966 | 49 | 1 | 49 | 0 | 0 | ||
| mlin-fermikit | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D1_5 | segdup | * | 97.1654 | 96.3735 | 97.9705 | 92.4302 | 1063 | 40 | 1062 | 22 | 19 | 86.3636 | |
| mlin-fermikit | INDEL | D1_5 | segdup | het | 97.3152 | 96.9653 | 97.6676 | 91.5120 | 671 | 21 | 670 | 16 | 13 | 81.2500 | |
| mlin-fermikit | INDEL | D1_5 | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.3820 | 39 | 13 | 40 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | segdup | homalt | 98.3264 | 98.3287 | 98.3240 | 93.5215 | 353 | 6 | 352 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | * | 86.7731 | 83.7696 | 90.0000 | 91.8182 | 160 | 31 | 162 | 18 | 17 | 94.4444 | |
| mlin-fermikit | INDEL | D6_15 | segdup | het | 89.9018 | 91.3043 | 88.5417 | 91.7241 | 84 | 8 | 85 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | D6_15 | segdup | hetalt | 74.3590 | 59.1837 | 100.0000 | 89.2193 | 29 | 20 | 29 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | segdup | homalt | 90.5115 | 94.0000 | 87.2727 | 92.8664 | 47 | 3 | 48 | 7 | 7 | 100.0000 | |