PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81451-81500 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.6937 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.4528 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | segdup | * | 99.1335 | 98.5494 | 99.7245 | 92.9129 | 1087 | 16 | 1086 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | het | 98.6884 | 97.8324 | 99.5595 | 91.9044 | 677 | 15 | 678 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 96.0426 | 51 | 1 | 52 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.6879 | 359 | 0 | 356 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 83.3333 | 97.8873 | 0 | 0 | 5 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 80.0000 | 96.2121 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.6667 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | segdup | * | 91.6633 | 90.7525 | 92.5926 | 94.5780 | 1001 | 102 | 1000 | 80 | 65 | 81.2500 | |
| jpowers-varprowl | INDEL | D1_5 | segdup | het | 93.5461 | 97.3988 | 89.9866 | 95.0659 | 674 | 18 | 674 | 75 | 61 | 81.3333 | |
| jpowers-varprowl | INDEL | D1_5 | segdup | hetalt | 0.0000 | 1.9231 | 0.0000 | 0.0000 | 1 | 51 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | segdup | homalt | 94.4928 | 90.8078 | 98.4894 | 93.0154 | 326 | 33 | 326 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | * | segdup | * | 89.1593 | 88.3803 | 89.9522 | 94.2165 | 2259 | 297 | 2256 | 252 | 223 | 88.4921 | |
| jpowers-varprowl | INDEL | * | segdup | het | 90.0339 | 94.9523 | 85.6000 | 95.0457 | 1392 | 74 | 1391 | 234 | 206 | 88.0342 | |
| jpowers-varprowl | INDEL | * | segdup | hetalt | 0.0000 | 0.7692 | 0.0000 | 0.0000 | 1 | 129 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | segdup | homalt | 93.9252 | 90.2083 | 97.9615 | 91.6422 | 866 | 94 | 865 | 18 | 17 | 94.4444 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | * | 80.4978 | 77.5862 | 83.6364 | 94.2827 | 45 | 13 | 46 | 9 | 8 | 88.8889 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | het | 86.6873 | 94.5946 | 80.0000 | 94.4030 | 35 | 2 | 36 | 9 | 8 | 88.8889 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | segdup | homalt | 90.9091 | 83.3333 | 100.0000 | 93.6709 | 10 | 2 | 10 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | segdup | * | 98.1687 | 99.3085 | 97.0548 | 94.6921 | 8473 | 59 | 8469 | 257 | 8 | 3.1128 | |
| jmaeng-gatk | SNP | tv | segdup | het | 97.3848 | 99.3758 | 95.4719 | 95.8451 | 5254 | 33 | 5250 | 249 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5685 | 7 | 0 | 7 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | segdup | homalt | 99.4735 | 99.1970 | 99.7516 | 89.7966 | 3212 | 26 | 3212 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | segdup | * | 67.5255 | 63.3508 | 72.2892 | 93.4978 | 121 | 70 | 120 | 46 | 46 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | segdup | het | 74.3119 | 88.0435 | 64.2857 | 94.1066 | 81 | 11 | 81 | 45 | 45 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | segdup | hetalt | 0.0000 | 2.0408 | 0.0000 | 0.0000 | 1 | 48 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | segdup | homalt | 86.6667 | 78.0000 | 97.5000 | 90.3614 | 39 | 11 | 39 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | segdup | * | 76.3282 | 68.0851 | 86.8421 | 91.3832 | 32 | 15 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | het | 76.5957 | 75.0000 | 78.2609 | 93.5393 | 18 | 6 | 18 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | segdup | homalt | 84.8485 | 73.6842 | 100.0000 | 82.3529 | 14 | 5 | 15 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | segdup | * | 98.1671 | 99.2090 | 97.1467 | 91.9113 | 27845 | 222 | 27851 | 818 | 71 | 8.6797 | |
| jpowers-varprowl | SNP | * | segdup | het | 97.3794 | 98.7931 | 96.0056 | 92.7629 | 17108 | 209 | 17113 | 712 | 6 | 0.8427 | |
| jpowers-varprowl | SNP | * | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | segdup | homalt | 99.4812 | 99.9441 | 99.0225 | 89.9716 | 10737 | 6 | 10738 | 106 | 65 | 61.3208 | |