PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81201-81250 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6336 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5493 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | D16_PLUS | segdup | * | 91.8033 | 96.5517 | 87.5000 | 96.9711 | 56 | 2 | 56 | 8 | 2 | 25.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 97.3897 | 37 | 0 | 35 | 7 | 1 | 14.2857 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8000 | 7 | 2 | 9 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 96.5699 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | segdup | * | 96.3351 | 96.3351 | 96.3351 | 93.8821 | 184 | 7 | 184 | 7 | 4 | 57.1429 | |
| dgrover-gatk | INDEL | D6_15 | segdup | het | 97.2973 | 97.8261 | 96.7742 | 95.2308 | 90 | 2 | 90 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4555 | 44 | 5 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.4051 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| dgrover-gatk | SNP | ti | segdup | * | 99.6780 | 99.8413 | 99.5153 | 89.9275 | 19506 | 31 | 19504 | 95 | 6 | 6.3158 | |
| dgrover-gatk | SNP | ti | segdup | het | 99.5358 | 99.8337 | 99.2397 | 90.9955 | 12010 | 20 | 12008 | 92 | 3 | 3.2609 | |
| dgrover-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6207 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | segdup | homalt | 99.9067 | 99.8534 | 99.9600 | 87.5169 | 7494 | 11 | 7494 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | * | segdup | * | 99.6727 | 99.8397 | 99.5063 | 90.5121 | 28022 | 45 | 28016 | 139 | 12 | 8.6331 | |
| dgrover-gatk | SNP | * | segdup | het | 99.5334 | 99.8152 | 99.2533 | 91.5277 | 17285 | 32 | 17279 | 130 | 3 | 2.3077 | |
| dgrover-gatk | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 7 | 0 | 7 | 0 | 0 | ||
| dgrover-gatk | SNP | * | segdup | homalt | 99.8976 | 99.8790 | 99.9162 | 88.2042 | 10730 | 13 | 10730 | 9 | 9 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | segdup | * | 99.4253 | 98.8571 | 100.0000 | 92.8894 | 173 | 2 | 173 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 93.9394 | 82 | 1 | 82 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7132 | 47 | 0 | 47 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | segdup | * | 99.2921 | 99.2446 | 99.3396 | 94.6513 | 1051 | 8 | 1053 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I1_5 | segdup | het | 99.1652 | 99.2565 | 99.0741 | 95.4899 | 534 | 4 | 535 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdup | hetalt | 97.8723 | 95.8333 | 100.0000 | 96.0963 | 46 | 2 | 47 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.8776 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | segdup | * | 92.5620 | 96.5517 | 88.8889 | 96.4467 | 56 | 2 | 56 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 96.7033 | 37 | 0 | 35 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1818 | 7 | 2 | 9 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7302 | 12 | 0 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdup | * | 99.5471 | 99.5467 | 99.5475 | 94.9619 | 1098 | 5 | 1100 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | het | 99.4942 | 99.4220 | 99.5665 | 95.0932 | 688 | 4 | 689 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6155 | 51 | 1 | 52 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5665 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.9253 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 96.3359 | 24 | 0 | 24 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3154 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.6524 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | * | 97.2740 | 96.8268 | 97.7253 | 93.8542 | 1068 | 35 | 1117 | 26 | 21 | 80.7692 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | het | 99.2846 | 99.1329 | 99.4366 | 93.3025 | 686 | 6 | 706 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | hetalt | 60.7686 | 44.2308 | 97.0588 | 96.6403 | 23 | 29 | 33 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | homalt | 97.2973 | 100.0000 | 94.7368 | 94.2878 | 359 | 0 | 378 | 21 | 20 | 95.2381 | |
| eyeh-varpipe | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 80.0000 | 98.4127 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 100.0000 | 99.2248 | 0 | 0 | 1 | 0 | 0 | ||