PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
81051-81100 / 86044 show all
ciseli-customINDEL*segduphetalt
0.0000
6.9231
0.0000
0.0000
9121000
ciseli-customINDEL*segduphomalt
85.4420
87.9167
83.1028
93.1884
844116841171150
87.7193
ckim-gatkINDELC16_PLUSsegdup*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSsegduphet
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSsegduphetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC16_PLUSsegduphomalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDEL*segdup*
97.7045
99.0219
96.4218
95.7792
25312525339410
10.6383
ckim-gatkINDEL*segduphet
96.8043
99.1814
94.5384
96.5594
1454121454841
1.1905
ckim-gatkINDEL*segduphetalt
95.5823
91.5385
100.0000
94.4622
1191112100
ckim-gatkINDEL*segduphomalt
99.3776
99.7917
98.9669
93.6950
9582958109
90.0000
ckim-dragenSNPtisegdup*
98.5623
99.8106
97.3449
91.6401
1950037195055329
1.6917
ckim-dragenSNPtisegduphet
97.7495
99.7922
95.7888
93.1126
1200525120105285
0.9470
ckim-dragenSNPtisegduphetalt
80.0000
100.0000
66.6667
98.6607
20211
100.0000
ckim-dragenSNPtisegduphomalt
99.9000
99.8401
99.9600
86.9440
749312749333
100.0000
ckim-dragenINDELI6_15segdup*
97.1910
98.8571
95.5801
93.3013
173217380
0.0000
ckim-dragenINDELI6_15segduphet
94.7977
98.7952
91.1111
94.6429
8218280
0.0000
ckim-dragenINDELI6_15segduphetalt
98.8764
97.7778
100.0000
89.2421
4414400
ckim-dragenINDELI6_15segduphomalt
100.0000
100.0000
100.0000
92.3328
4704700
ckim-gatkINDELC1_5segdup*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC1_5segduphet
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC1_5segduphetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC1_5segduphomalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15segdup*
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15segduphet
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15segduphetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELC6_15segduphomalt
0.0000
0.0000
0.0000
00000
ckim-dragenSNPtvsegdup*
98.3491
99.8476
96.8949
93.2025
85191385192736
2.1978
ckim-dragenSNPtvsegduphet
97.4236
99.7730
95.1822
94.3912
52751252752670
0.0000
ckim-dragenSNPtvsegduphetalt
93.3333
100.0000
87.5000
97.7716
70711
100.0000
ckim-dragenSNPtvsegduphomalt
99.9074
99.9691
99.8458
89.2553
32371323755
100.0000
ckim-dragenSNP*segdup*
98.4991
99.8219
97.2109
92.1838
28017502802280414
1.7413
ckim-dragenSNP*segduphet
97.6498
99.7863
95.6029
93.5624
1728037172857955
0.6289
ckim-dragenSNP*segduphetalt
93.3333
100.0000
87.5000
97.7716
70711
100.0000
ckim-dragenSNP*segduphomalt
99.9022
99.8790
99.9255
87.7402
10730131073088
100.0000
cchapple-customINDELD16_PLUSsegdup*
94.8714
94.8276
94.9153
95.0833
5535633
100.0000
cchapple-customINDELD16_PLUSsegduphet
96.7033
100.0000
93.6170
95.2090
3704433
100.0000
cchapple-customINDELD16_PLUSsegduphetalt
0.0000
66.6667
0.0000
0.0000
63000
cchapple-customINDELD16_PLUSsegduphomalt
100.0000
100.0000
100.0000
94.5205
1201200
cchapple-customINDELI16_PLUSsegduphomalt
100.0000
100.0000
100.0000
93.2384
1901900
cchapple-customINDELI1_5segdup*
99.3368
99.1501
99.5243
94.3140
10509104653
60.0000
cchapple-customINDELI1_5segduphet
99.1750
98.6989
99.6558
95.3303
531757920
0.0000
cchapple-customINDELI1_5segduphetalt
0.0000
95.8333
0.0000
0.0000
462000
cchapple-customINDELI1_5segduphomalt
99.6798
100.0000
99.3617
92.2211
473046733
100.0000
cchapple-customINDELI6_15segdup*
99.1468
98.8571
99.4382
92.6110
173217710
0.0000
cchapple-customINDELI6_15segduphet
99.6255
100.0000
99.2537
92.8034
83013310
0.0000
cchapple-customINDELI6_15segduphetalt
0.0000
97.7778
0.0000
0.0000
441000
cchapple-customINDELI6_15segduphomalt
98.9247
97.8723
100.0000
91.9561
4614400
cchapple-customSNP*segdup*
99.5856
99.8219
99.3504
91.8828
28017502798818325
13.6612
cchapple-customSNP*segduphet
99.4246
99.7863
99.0654
93.2744
1728037172781635
3.0675
cchapple-customSNP*segduphetalt
0.0000
100.0000
0.0000
0.0000
70000