PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81001-81050 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | segdup | * | 95.0488 | 98.0661 | 92.2117 | 92.0351 | 8367 | 165 | 8347 | 705 | 88 | 12.4823 | |
| ciseli-custom | SNP | tv | segdup | het | 93.4710 | 97.3331 | 89.9038 | 92.8401 | 5146 | 141 | 5138 | 577 | 16 | 2.7730 | |
| ciseli-custom | SNP | tv | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | segdup | homalt | 97.7133 | 99.2897 | 96.1862 | 90.1152 | 3215 | 23 | 3203 | 127 | 72 | 56.6929 | |
| ciseli-custom | SNP | * | segdup | * | 96.6280 | 98.6033 | 94.7303 | 91.0474 | 27675 | 392 | 27504 | 1530 | 201 | 13.1373 | |
| ciseli-custom | SNP | * | segdup | het | 95.5747 | 98.0713 | 93.2020 | 92.0353 | 16983 | 334 | 16891 | 1232 | 33 | 2.6786 | |
| ciseli-custom | SNP | * | segdup | hetalt | 85.7143 | 85.7143 | 85.7143 | 95.0704 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | segdup | homalt | 98.3606 | 99.4694 | 97.2762 | 88.7149 | 10686 | 57 | 10607 | 297 | 168 | 56.5657 | |
| ckim-dragen | INDEL | * | segdup | * | 97.1040 | 99.1784 | 95.1146 | 95.2650 | 2535 | 21 | 2531 | 130 | 14 | 10.7692 | |
| ckim-dragen | INDEL | * | segdup | het | 95.8400 | 99.3861 | 92.5383 | 95.9567 | 1457 | 9 | 1451 | 117 | 2 | 1.7094 | |
| ckim-dragen | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.5025 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-dragen | INDEL | * | segdup | homalt | 99.2754 | 99.8958 | 98.6626 | 93.6124 | 959 | 1 | 959 | 13 | 12 | 92.3077 | |
| ciseli-custom | INDEL | D6_15 | segdup | * | 68.3802 | 65.4450 | 71.5909 | 94.3207 | 125 | 66 | 126 | 50 | 32 | 64.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | het | 78.3734 | 80.4348 | 76.4151 | 94.8494 | 74 | 18 | 81 | 25 | 8 | 32.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 12.2449 | 0.0000 | 0.0000 | 6 | 43 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | segdup | homalt | 75.0000 | 90.0000 | 64.2857 | 93.2757 | 45 | 5 | 45 | 25 | 24 | 96.0000 | |
| ciseli-custom | INDEL | I1_5 | segdup | * | 88.5870 | 87.6298 | 89.5652 | 93.7669 | 928 | 131 | 927 | 108 | 88 | 81.4815 | |
| ciseli-custom | INDEL | I1_5 | segdup | het | 90.6052 | 93.4944 | 87.8893 | 95.0934 | 503 | 35 | 508 | 70 | 50 | 71.4286 | |
| ciseli-custom | INDEL | I1_5 | segdup | hetalt | 0.0000 | 6.2500 | 0.0000 | 0.0000 | 3 | 45 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | segdup | homalt | 90.4345 | 89.2178 | 91.6849 | 90.5285 | 422 | 51 | 419 | 38 | 38 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | * | 70.3704 | 65.5172 | 76.0000 | 92.2118 | 38 | 20 | 38 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | het | 79.5789 | 72.9730 | 87.5000 | 90.3614 | 27 | 10 | 28 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | segdup | homalt | 69.1824 | 91.6667 | 55.5556 | 94.1935 | 11 | 1 | 10 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 21.0526 | 98.7821 | 0 | 0 | 4 | 15 | 4 | 26.6667 | |
| ciseli-custom | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 33.3333 | 99.4286 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 18.7500 | 98.4541 | 0 | 0 | 3 | 13 | 4 | 30.7692 | |
| ciseli-custom | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 98.8142 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | C6_15 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 98.4293 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| cchapple-custom | SNP | ti | segdup | * | 99.6040 | 99.8311 | 99.3779 | 91.2552 | 19504 | 33 | 19490 | 122 | 16 | 13.1148 | |
| cchapple-custom | SNP | ti | segdup | het | 99.4449 | 99.8088 | 99.0837 | 92.7182 | 12007 | 23 | 12003 | 111 | 5 | 4.5045 | |
| cchapple-custom | SNP | ti | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | segdup | homalt | 99.8600 | 99.8668 | 99.8533 | 87.0523 | 7495 | 10 | 7487 | 11 | 11 | 100.0000 | |
| cchapple-custom | SNP | tv | segdup | * | 99.5434 | 99.8008 | 99.2874 | 93.0362 | 8515 | 17 | 8499 | 61 | 9 | 14.7541 | |
| cchapple-custom | SNP | tv | segdup | het | 99.3783 | 99.7352 | 99.0240 | 94.2756 | 5273 | 14 | 5276 | 52 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | segdup | homalt | 99.8144 | 99.9074 | 99.7215 | 89.1707 | 3235 | 3 | 3223 | 9 | 9 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | segdup | * | 89.4589 | 90.6618 | 88.2875 | 95.2028 | 1000 | 103 | 995 | 132 | 80 | 60.6061 | |
| ciseli-custom | INDEL | D1_5 | segdup | het | 92.5651 | 94.3642 | 90.8333 | 95.6342 | 653 | 39 | 654 | 66 | 21 | 31.8182 | |
| ciseli-custom | INDEL | D1_5 | segdup | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 4 | 48 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | segdup | homalt | 89.2779 | 95.5432 | 83.7838 | 94.1865 | 343 | 16 | 341 | 66 | 59 | 89.3939 | |
| ciseli-custom | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 50.0000 | 97.7778 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 50.0000 | 97.2222 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | segdup | * | 85.0497 | 84.0767 | 86.0456 | 94.6455 | 2149 | 407 | 2152 | 349 | 240 | 68.7679 | |
| ciseli-custom | INDEL | * | segdup | het | 88.2244 | 88.4038 | 88.0457 | 95.3251 | 1296 | 170 | 1311 | 178 | 90 | 50.5618 | |