PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80901-80950 / 86044 show all
hfeng-pmm1INDELI6_15segdup*
99.1404
98.8571
99.4253
92.0693
173217310
0.0000
hfeng-pmm1INDELI6_15segduphet
98.7952
98.7952
98.7952
92.9780
8218210
0.0000
hfeng-pmm1INDELI6_15segduphetalt
98.8764
97.7778
100.0000
89.8148
4414400
hfeng-pmm1INDELI6_15segduphomalt
100.0000
100.0000
100.0000
91.8966
4704700
hfeng-pmm1SNPtvsegdup*
99.7305
99.7773
99.6837
90.5181
8513198509276
22.2222
hfeng-pmm1SNPtvsegduphet
99.6406
99.6785
99.6028
90.6534
5270175266210
0.0000
hfeng-pmm1SNPtvsegduphetalt
100.0000
100.0000
100.0000
97.5610
70700
hfeng-pmm1SNPtvsegduphomalt
99.8765
99.9382
99.8149
90.2264
32362323666
100.0000
hfeng-pmm1INDELI16_PLUSsegdup*
100.0000
100.0000
100.0000
95.4146
4704700
hfeng-pmm1INDELI16_PLUSsegduphet
100.0000
100.0000
100.0000
95.5140
2402400
hfeng-pmm1INDELI16_PLUSsegduphetalt
100.0000
100.0000
100.0000
97.4026
40400
hfeng-pmm1INDELI16_PLUSsegduphomalt
100.0000
100.0000
100.0000
94.3452
1901900
hfeng-pmm1SNPtisegdup*
99.7442
99.8004
99.6881
88.7407
194983919496615
8.1967
hfeng-pmm1SNPtisegduphet
99.6179
99.7007
99.5352
89.0346
119943611992560
0.0000
hfeng-pmm1SNPtisegduphetalt
100.0000
100.0000
100.0000
98.8889
20200
hfeng-pmm1SNPtisegduphomalt
99.9467
99.9600
99.9334
88.2045
75023750255
100.0000
hfeng-pmm1INDELD6_15segdup*
96.0000
94.2408
97.8261
92.8377
1801118042
50.0000
hfeng-pmm1INDELD6_15segduphet
96.1326
94.5652
97.7528
94.0067
8758720
0.0000
hfeng-pmm1INDELD6_15segduphetalt
93.4783
87.7551
100.0000
90.7328
4364300
hfeng-pmm1INDELD6_15segduphomalt
98.0392
100.0000
96.1538
91.6129
5005022
100.0000
hfeng-pmm2INDEL*segdup*
99.0994
98.9828
99.2163
94.4475
2530262532204
20.0000
hfeng-pmm2INDEL*segduphet
98.9768
98.9768
98.9768
94.9944
1451151451150
0.0000
hfeng-pmm2INDEL*segduphetalt
96.4143
93.0769
100.0000
94.8471
121912300
hfeng-pmm2INDEL*segduphomalt
99.6360
99.7917
99.4808
93.2596
958295854
80.0000
hfeng-pmm1SNP*segdup*
99.7400
99.7934
99.6867
89.3409
2800958280038811
12.5000
hfeng-pmm1SNP*segduphet
99.6248
99.6939
99.5558
89.5848
172645317258770
0.0000
hfeng-pmm1SNP*segduphetalt
100.0000
100.0000
100.0000
97.5610
70700
hfeng-pmm1SNP*segduphomalt
99.9256
99.9535
99.8977
88.8973
107385107381111
100.0000
ghariani-varprowlINDELI16_PLUSsegdup*
81.9440
76.5957
88.0952
93.0116
36113755
100.0000
ghariani-varprowlINDELI16_PLUSsegduphet
86.2745
91.6667
81.4815
94.7674
2222255
100.0000
ghariani-varprowlINDELI16_PLUSsegduphetalt
0.0000
0.0000
0.0000
04000
ghariani-varprowlINDELI16_PLUSsegduphomalt
84.8485
73.6842
100.0000
82.3529
1451500
ghariani-varprowlINDELD1_5segdup*
91.2316
92.0218
90.4550
95.5776
101588101410765
60.7477
ghariani-varprowlINDELD1_5segduphet
92.8475
99.4220
87.0886
96.1448
688468810261
59.8039
ghariani-varprowlINDELD1_5segduphetalt
0.0000
1.9231
0.0000
0.0000
151000
ghariani-varprowlINDELD1_5segduphomalt
94.4928
90.8078
98.4894
93.1837
3263332654
80.0000
ghariani-varprowlINDELI6_15segdup*
72.0984
66.8571
78.2313
93.2039
117581153232
100.0000
ghariani-varprowlINDELI6_15segduphet
83.2383
97.5904
72.5664
93.7844
812823131
100.0000
ghariani-varprowlINDELI6_15segduphetalt
0.0000
2.2222
0.0000
0.0000
144000
ghariani-varprowlINDELI6_15segduphomalt
84.2758
74.4681
97.0588
90.1449
35123311
100.0000
ghariani-varprowlINDELD6_15segdup*
69.3267
66.4921
72.4138
94.6180
127641264846
95.8333
ghariani-varprowlINDELD6_15segduphet
76.9912
94.5652
64.9254
95.2347
875874745
95.7447
ghariani-varprowlINDELD6_15segduphetalt
0.0000
2.0408
0.0000
0.0000
148000
ghariani-varprowlINDELD6_15segduphomalt
86.6667
78.0000
97.5000
90.4988
39113911
100.0000
ghariani-varprowlSNP*segdup*
97.8779
99.6437
96.1737
92.2561
2796710027975111370
6.2893
ghariani-varprowlSNP*segduphet
96.9575
99.5207
94.5230
93.2841
1723483172419995
0.5005
ghariani-varprowlSNP*segduphetalt
0.0000
0.0000
0.0000
07000
ghariani-varprowlSNP*segduphomalt
99.4257
99.9069
98.9491
89.5722
10733101073411465
57.0175
ghariani-varprowlINDELI1_5segdup*
91.1523
91.5958
90.7129
95.2994
970899679967
67.6768
ghariani-varprowlINDELI1_5segduphet
91.7878
98.1413
86.2069
96.5587
528105258456
66.6667