PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80851-80900 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | segdup | homalt | 99.0657 | 99.8456 | 98.2979 | 91.0501 | 3233 | 5 | 3234 | 56 | 29 | 51.7857 | |
| hfeng-pmm1 | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D1_5 | segdup | * | 99.4565 | 99.4560 | 99.4570 | 94.0511 | 1097 | 6 | 1099 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | segdup | het | 99.2064 | 99.2775 | 99.1354 | 93.9383 | 687 | 5 | 688 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6007 | 51 | 1 | 52 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9603 | 359 | 0 | 359 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 58 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 37 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | segdup | * | 87.1437 | 84.2248 | 90.2721 | 96.4637 | 929 | 174 | 1095 | 118 | 18 | 15.2542 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | het | 86.5545 | 84.9711 | 88.1980 | 96.8115 | 588 | 104 | 695 | 93 | 8 | 8.6022 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | hetalt | 60.6593 | 46.1538 | 88.4615 | 98.5126 | 24 | 28 | 23 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | homalt | 91.2889 | 88.3008 | 94.4862 | 94.9101 | 317 | 42 | 377 | 22 | 10 | 45.4545 | |
| gduggal-snapplat | INDEL | * | segdup | * | 77.9673 | 71.4789 | 85.7514 | 96.5099 | 1827 | 729 | 1980 | 329 | 27 | 8.2067 | |
| gduggal-snapplat | INDEL | * | segdup | het | 76.3682 | 71.8281 | 81.5210 | 97.0363 | 1053 | 413 | 1147 | 260 | 13 | 5.0000 | |
| gduggal-snapplat | INDEL | * | segdup | hetalt | 55.6430 | 40.0000 | 91.3793 | 97.9993 | 52 | 78 | 53 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | * | segdup | homalt | 82.9294 | 75.2083 | 92.4171 | 94.6528 | 722 | 238 | 780 | 64 | 13 | 20.3125 | |
| gduggal-snapfb | SNP | tv | segdup | * | 98.5144 | 99.4491 | 97.5971 | 92.7173 | 8485 | 47 | 8489 | 209 | 12 | 5.7416 | |
| gduggal-snapfb | SNP | tv | segdup | het | 98.0225 | 99.3191 | 96.7593 | 93.1540 | 5251 | 36 | 5255 | 176 | 3 | 1.7046 | |
| gduggal-snapfb | SNP | tv | segdup | hetalt | 77.7778 | 100.0000 | 63.6364 | 96.7930 | 7 | 0 | 7 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | SNP | tv | segdup | homalt | 99.3840 | 99.6603 | 99.1093 | 91.8109 | 3227 | 11 | 3227 | 29 | 8 | 27.5862 | |
| gduggal-snapplat | INDEL | C6_15 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | segdup | * | 57.7618 | 43.4555 | 86.1111 | 95.1968 | 83 | 108 | 62 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | het | 48.4621 | 36.9565 | 70.3704 | 96.6376 | 34 | 58 | 19 | 8 | 1 | 12.5000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | hetalt | 58.4071 | 42.8571 | 91.6667 | 93.2394 | 21 | 28 | 22 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | homalt | 71.7949 | 56.0000 | 100.0000 | 93.8416 | 28 | 22 | 21 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | segdup | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | segdup | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I1_5 | segdup | * | 99.1501 | 99.0557 | 99.2446 | 94.2109 | 1049 | 10 | 1051 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | het | 98.9797 | 99.0706 | 98.8889 | 94.9664 | 533 | 5 | 534 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1730 | 45 | 3 | 46 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.5664 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |