PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80801-80850 / 86044 show all
gduggal-snapvardINDELI6_15segdup*
60.2107
55.4286
65.8960
90.9708
97781145950
84.7458
gduggal-snapvardINDELI6_15segduphet
71.6829
85.5422
61.6883
91.3966
7112955950
84.7458
gduggal-snapvardINDELI6_15segduphetalt
0.0000
28.8889
0.0000
0.0000
1332000
gduggal-snapvardINDELI6_15segduphomalt
43.3333
27.6596
100.0000
84.9206
13341900
gduggal-snapplatINDELI6_15segdup*
42.6472
30.2857
72.0588
94.2761
5312249192
10.5263
gduggal-snapplatINDELI6_15segduphet
37.0075
26.5060
61.2903
95.4210
226119121
8.3333
gduggal-snapplatINDELI6_15segduphetalt
61.5385
44.4444
100.0000
92.0949
20252000
gduggal-snapplatINDELI6_15segduphomalt
33.4855
23.4043
58.8235
93.4109
11361071
14.2857
gduggal-snapplatINDELI1_5segdup*
78.0848
75.0708
81.3508
96.7377
7952648071856
3.2432
gduggal-snapplatINDELI1_5segduphet
74.8930
76.0223
73.7968
97.3622
4091294141473
2.0408
gduggal-snapplatINDELI1_5segduphetalt
56.4516
41.6667
87.5000
98.6644
20282131
33.3333
gduggal-snapplatINDELI1_5segduphomalt
83.8070
77.3784
91.4005
94.4573
366107372352
5.7143
gduggal-snapplatSNP*segdup*
98.9750
98.7209
99.2304
93.4858
277083592772321530
13.9535
gduggal-snapplatSNP*segduphet
98.6817
98.5044
98.8598
94.8279
170582591708019717
8.6294
gduggal-snapplatSNP*segduphetalt
100.0000
100.0000
100.0000
97.8125
70700
gduggal-snapplatSNP*segduphomalt
99.4486
99.0692
99.8310
88.7280
10643100106361813
72.2222
gduggal-snapplatSNPtvsegdup*
98.7367
98.4294
99.0458
94.5607
839813484088113
16.0494
gduggal-snapplatSNPtvsegduphet
98.3319
98.0329
98.6327
95.7233
51831045194726
8.3333
gduggal-snapplatSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.8125
70700
gduggal-snapplatSNPtvsegduphomalt
99.3958
99.0735
99.7201
90.1395
320830320797
77.7778
gduggal-snapplatSNPtisegdup*
99.0792
98.8483
99.3111
92.8755
193122251931713417
12.6866
gduggal-snapplatSNPtisegduphet
98.8353
98.7116
98.9593
94.3052
118751551188612511
8.8000
gduggal-snapplatSNPtisegduphetalt
100.0000
100.0000
100.0000
99.0099
20200
gduggal-snapplatSNPtisegduphomalt
99.4715
99.0673
99.8790
87.9842
743570742996
66.6667
gduggal-snapvardINDEL*segdup*
85.3233
85.0548
85.5935
95.1733
21743822430409309
75.5501
gduggal-snapvardINDEL*segduphet
85.9532
91.8827
80.7426
95.9123
13471191631389289
74.2931
gduggal-snapvardINDEL*segduphetalt
0.0000
44.6154
0.0000
0.0000
5872000
gduggal-snapvardINDEL*segduphomalt
87.9737
80.1042
97.5580
91.2900
7691917992020
100.0000
gduggal-snapplatINDELI16_PLUSsegdup*
0.0000
0.0000
0.0000
047000
gduggal-snapplatINDELI16_PLUSsegduphet
0.0000
0.0000
0.0000
024000
gduggal-snapplatINDELI16_PLUSsegduphetalt
0.0000
0.0000
0.0000
04000
gduggal-snapplatINDELI16_PLUSsegduphomalt
0.0000
0.0000
0.0000
019000
hfeng-pmm1INDELC16_PLUSsegdup*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSsegduphet
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSsegduphetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSsegduphomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELD16_PLUSsegdup*
94.9153
96.5517
93.3333
95.3811
5625640
0.0000
hfeng-pmm1INDELD16_PLUSsegduphet
94.5946
100.0000
89.7436
95.7330
3703540
0.0000
hfeng-pmm1INDELD16_PLUSsegduphetalt
87.5000
77.7778
100.0000
92.8571
72900
hfeng-pmm1INDELD16_PLUSsegduphomalt
100.0000
100.0000
100.0000
95.3668
1201200
hfeng-pmm1INDEL*segdup*
99.0215
98.9437
99.0995
94.0294
2529272531234
17.3913
hfeng-pmm1INDEL*segduphet
98.8075
98.9086
98.7066
94.4130
1450161450190
0.0000
hfeng-pmm1INDEL*segduphetalt
96.4143
93.0769
100.0000
94.8341
121912300
hfeng-pmm1INDEL*segduphomalt
99.6878
99.7917
99.5842
93.1783
958295844
100.0000
ghariani-varprowlSNPtisegdup*
98.2251
99.6929
96.7998
91.5895
19477601948064438
5.9006
ghariani-varprowlSNPtisegduphet
97.4023
99.5594
95.3366
92.6943
1197753119805862
0.3413
ghariani-varprowlSNPtisegduphetalt
0.0000
0.0000
0.0000
02000
ghariani-varprowlSNPtisegduphomalt
99.5818
99.9334
99.2326
88.7647
7500575005836
62.0690
ghariani-varprowlSNPtvsegdup*
97.0800
99.5077
94.7680
93.4258
849042849546932
6.8230
ghariani-varprowlSNPtvsegduphet
95.9597
99.4326
92.7212
94.3028
52573052614133
0.7264