PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80601-80650 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_siren | * | 59.5493 | 55.7377 | 63.9205 | 78.6148 | 170 | 135 | 225 | 127 | 95 | 74.8031 | |
| gduggal-snapvard | INDEL | I6_15 | map_siren | het | 70.4297 | 84.6154 | 60.3175 | 79.3713 | 121 | 22 | 190 | 125 | 93 | 74.4000 | |
| gduggal-snapvard | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 29.1667 | 0.0000 | 0.0000 | 21 | 51 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_siren | homalt | 46.8227 | 31.1111 | 94.5946 | 68.9076 | 28 | 62 | 35 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_siren | * | 95.8840 | 96.8735 | 94.9146 | 68.0322 | 44494 | 1436 | 44271 | 2372 | 211 | 8.8955 | |
| gduggal-snapvard | SNP | tv | map_siren | het | 94.6657 | 97.2841 | 92.1846 | 72.3745 | 27832 | 777 | 27719 | 2350 | 198 | 8.4255 | |
| gduggal-snapvard | SNP | tv | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | map_siren | homalt | 98.2279 | 96.6415 | 99.8673 | 55.2791 | 16661 | 579 | 16552 | 22 | 13 | 59.0909 | |
| ghariani-varprowl | INDEL | * | map_siren | * | 90.8910 | 92.7126 | 89.1397 | 90.4253 | 6870 | 540 | 6870 | 837 | 449 | 53.6440 | |
| ghariani-varprowl | INDEL | * | map_siren | het | 91.4200 | 98.4028 | 85.3626 | 87.1990 | 4436 | 72 | 4438 | 761 | 424 | 55.7162 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | * | 94.8307 | 95.3488 | 94.3182 | 91.7987 | 82 | 4 | 83 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | het | 94.0000 | 95.9184 | 92.1569 | 90.3774 | 47 | 2 | 47 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.9699 | 15 | 1 | 16 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.8780 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | * | 99.1319 | 98.7354 | 99.5316 | 79.6028 | 2967 | 38 | 2975 | 14 | 4 | 28.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | het | 98.8017 | 98.0369 | 99.5786 | 80.1885 | 1648 | 33 | 1654 | 7 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | map_siren | * | 99.7016 | 99.5376 | 99.8660 | 52.2018 | 99891 | 464 | 99878 | 134 | 42 | 31.3433 | |
| hfeng-pmm1 | SNP | ti | map_siren | het | 99.5806 | 99.3331 | 99.8292 | 52.2251 | 61966 | 416 | 61957 | 106 | 24 | 22.6415 | |
| hfeng-pmm1 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_siren | homalt | 99.9011 | 99.8760 | 99.9261 | 52.1075 | 37869 | 47 | 37865 | 28 | 18 | 64.2857 | |
| hfeng-pmm1 | SNP | tv | map_siren | * | 99.7188 | 99.5885 | 99.8494 | 56.2301 | 45741 | 189 | 45734 | 69 | 22 | 31.8841 | |
| hfeng-pmm1 | SNP | tv | map_siren | het | 99.6130 | 99.4093 | 99.8175 | 56.2607 | 28440 | 169 | 28435 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_siren | homalt | 99.8956 | 99.8898 | 99.9014 | 56.0205 | 17221 | 19 | 17219 | 17 | 8 | 47.0588 | |
| hfeng-pmm2 | INDEL | * | map_siren | * | 98.8132 | 98.7719 | 98.8544 | 81.7102 | 7319 | 91 | 7335 | 85 | 17 | 20.0000 | |
| hfeng-pmm2 | INDEL | * | map_siren | het | 98.6272 | 98.7134 | 98.5411 | 82.4078 | 4450 | 58 | 4458 | 66 | 5 | 7.5758 | |
| hfeng-pmm2 | INDEL | * | map_siren | hetalt | 96.2185 | 92.7126 | 100.0000 | 87.6338 | 229 | 18 | 231 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_siren | homalt | 99.3610 | 99.4350 | 99.2871 | 79.4763 | 2640 | 15 | 2646 | 19 | 12 | 63.1579 | |
| hfeng-pmm1 | SNP | * | map_siren | * | 99.7072 | 99.5541 | 99.8607 | 53.5315 | 145576 | 652 | 145556 | 203 | 64 | 31.5271 | |
| hfeng-pmm1 | SNP | * | map_siren | het | 99.5907 | 99.3571 | 99.8255 | 53.5727 | 90406 | 585 | 90392 | 158 | 38 | 24.0506 | |
| hfeng-pmm1 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_siren | homalt | 99.8994 | 99.8803 | 99.9184 | 53.4037 | 55090 | 66 | 55084 | 45 | 26 | 57.7778 | |
| hfeng-pmm1 | INDEL | D6_15 | map_siren | * | 98.1160 | 97.2495 | 98.9980 | 81.6071 | 495 | 14 | 494 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_siren | het | 98.2111 | 98.2143 | 98.2079 | 83.3333 | 275 | 5 | 274 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 76.1538 | 93 | 6 | 93 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_siren | homalt | 98.8327 | 97.6923 | 100.0000 | 80.4314 | 127 | 3 | 127 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5854 | 109 | 3 | 109 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_siren | homalt | 99.6300 | 99.8350 | 99.4258 | 77.3924 | 1210 | 2 | 1212 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | * | 96.4706 | 94.0984 | 98.9655 | 83.1395 | 287 | 18 | 287 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 84.2670 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.3846 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 83.6331 | 89 | 1 | 89 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_siren | * | 70.0206 | 64.5902 | 76.4479 | 84.8980 | 197 | 108 | 198 | 61 | 55 | 90.1639 | |
| ghariani-varprowl | INDEL | I6_15 | map_siren | het | 79.3596 | 91.6084 | 70.0000 | 86.6760 | 131 | 12 | 133 | 57 | 52 | 91.2281 | |