PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80551-80600 / 86044 show all
gduggal-snapplatINDELI6_15map_sirenhetalt
19.7183
11.1111
87.5000
93.7008
864710
0.0000
gduggal-snapplatINDELI6_15map_sirenhomalt
34.4828
22.2222
76.9231
89.1667
20702062
33.3333
hfeng-pmm1INDEL*map_siren*
98.7669
98.3131
99.2250
80.4107
728512572985712
21.0526
hfeng-pmm1INDEL*map_sirenhet
98.4945
97.9148
99.0811
80.4769
4414944421413
7.3171
hfeng-pmm1INDEL*map_sirenhetalt
96.4361
93.1174
100.0000
87.5803
2301723200
hfeng-pmm1INDEL*map_sirenhomalt
99.4357
99.4727
99.3987
79.2482
2641142645169
56.2500
ghariani-varprowlSNPtimap_siren*
99.0024
99.3374
98.6698
59.6146
99690665996931344247
18.3780
ghariani-varprowlSNPtimap_sirenhet
98.6913
99.3636
98.0280
62.9270
61985397619871247191
15.3168
ghariani-varprowlSNPtimap_sirenhetalt
0.0000
0.0000
0.0000
057000
ghariani-varprowlSNPtimap_sirenhomalt
99.5932
99.4435
99.7434
52.5183
37705211377069756
57.7320
ghariani-varprowlSNPtvmap_siren*
98.2281
99.2140
97.2616
65.3754
45569361455701283183
14.2634
ghariani-varprowlSNPtvmap_sirenhet
97.7279
99.4512
96.0633
68.6369
28452157284531166112
9.6055
ghariani-varprowlSNPtvmap_sirenhetalt
0.0000
0.0000
0.0000
081000
ghariani-varprowlSNPtvmap_sirenhomalt
99.3038
99.2865
99.3211
57.8404
171171231711711771
60.6838
hfeng-pmm1INDELD16_PLUSmap_siren*
92.3827
93.7063
91.0959
92.6633
1349133131
7.6923
hfeng-pmm1INDELD16_PLUSmap_sirenhet
92.3788
96.1538
88.8889
94.1727
7537291
11.1111
hfeng-pmm1INDELD16_PLUSmap_sirenhetalt
93.1034
87.0968
100.0000
82.5301
2742900
hfeng-pmm1INDELD16_PLUSmap_sirenhomalt
91.4286
94.1176
88.8889
91.7051
3223240
0.0000
hfeng-pmm1INDELC1_5map_siren*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_sirenhet
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_sirenhetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_sirenhomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELD1_5map_siren*
99.0467
98.5832
99.5147
78.4947
3479503486172
11.7647
hfeng-pmm1INDELD1_5map_sirenhet
98.8087
98.2872
99.3357
77.5055
2238392243150
0.0000
hfeng-pmm1INDELD1_5map_sirenhetalt
96.2963
92.8571
100.0000
91.0242
7867800
hfeng-pmm1INDELD1_5map_sirenhomalt
99.7001
99.5719
99.8286
78.3166
11635116522
100.0000
hfeng-pmm1INDELC6_15map_siren*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC6_15map_sirenhet
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC6_15map_sirenhetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC6_15map_sirenhomalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSmap_siren*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSmap_sirenhet
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSmap_sirenhetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSmap_sirenhomalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNPtimap_siren*
96.3076
96.1556
96.4600
63.8276
964973858955343506409
11.6657
gduggal-snapvardSNPtimap_sirenhet
95.3627
96.2088
94.5314
68.3335
600172365594993442355
10.3138
gduggal-snapvardSNPtimap_sirenhetalt
0.0000
1.7544
0.0000
0.0000
156000
gduggal-snapvardSNPtimap_sirenhomalt
97.9831
96.2100
99.8227
51.8924
364791437360356454
84.3750
ghariani-varprowlINDELC1_5map_siren*
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC1_5map_sirenhet
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC1_5map_sirenhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC1_5map_sirenhomalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardSNP*map_siren*
96.2272
96.4179
96.0373
65.1379
14099052381390385737591
10.3016
gduggal-snapvardSNP*map_sirenhet
95.1967
96.5469
93.8838
69.6200
878493142867435651524
9.2727
gduggal-snapvardSNP*map_sirenhetalt
0.0000
1.2346
0.0000
0.0000
180000
gduggal-snapvardSNP*map_sirenhomalt
98.0593
96.3449
99.8358
52.8740
531402016522958667
77.9070
ghariani-varprowlINDEL*map_sirenhetalt
0.0000
0.8097
0.0000
0.0000
2245000
ghariani-varprowlINDEL*map_sirenhomalt
94.2088
91.6008
96.9697
74.6820
243222324327625
32.8947
ghariani-varprowlINDELC16_PLUSmap_siren*
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELC16_PLUSmap_sirenhet
0.0000
0.0000
0.0000
00000