PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80501-80550 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D1_5 | map_siren | * | 99.2660 | 99.4899 | 99.0431 | 81.6382 | 3511 | 18 | 3519 | 34 | 6 | 17.6471 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | het | 99.1706 | 99.6047 | 98.7402 | 81.3769 | 2268 | 9 | 2273 | 29 | 2 | 6.8966 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 89.6507 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | homalt | 99.6580 | 99.6575 | 99.6584 | 81.1615 | 1164 | 4 | 1167 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_siren | * | 98.9031 | 99.0553 | 98.7513 | 82.8003 | 7340 | 70 | 7355 | 93 | 21 | 22.5806 | |
| bgallagher-sentieon | INDEL | * | map_siren | het | 98.7628 | 99.0683 | 98.4592 | 83.3559 | 4466 | 42 | 4473 | 70 | 8 | 11.4286 | |
| bgallagher-sentieon | INDEL | * | map_siren | hetalt | 96.4527 | 93.5223 | 99.5726 | 86.1210 | 231 | 16 | 233 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_siren | homalt | 99.3618 | 99.5480 | 99.1763 | 81.3504 | 2643 | 12 | 2649 | 22 | 13 | 59.0909 | |
| bgallagher-sentieon | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | * | 92.1664 | 95.1049 | 89.4040 | 94.5171 | 136 | 7 | 135 | 16 | 2 | 12.5000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 95.6967 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.6347 | 27 | 4 | 29 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | homalt | 91.6667 | 97.0588 | 86.8421 | 94.0157 | 33 | 1 | 33 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | map_siren | * | 96.8913 | 95.7977 | 98.0103 | 67.7918 | 140083 | 6145 | 140139 | 2845 | 1340 | 47.1002 | |
| gduggal-snapplat | SNP | * | map_siren | het | 96.5899 | 96.2777 | 96.9043 | 72.4626 | 87604 | 3387 | 87710 | 2802 | 1309 | 46.7166 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_siren | homalt | 97.4154 | 95.0214 | 99.9332 | 54.3867 | 52410 | 2746 | 52361 | 35 | 23 | 65.7143 | |
| gduggal-snapplat | SNP | tv | map_siren | * | 96.3584 | 95.1687 | 97.5782 | 71.5667 | 43711 | 2219 | 43717 | 1085 | 492 | 45.3456 | |
| gduggal-snapplat | SNP | tv | map_siren | het | 96.1131 | 95.9558 | 96.2709 | 75.9094 | 27452 | 1157 | 27468 | 1064 | 479 | 45.0188 | |
| gduggal-snapplat | SNP | tv | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | homalt | 96.8214 | 93.9095 | 99.9197 | 58.2133 | 16190 | 1050 | 16181 | 13 | 5 | 38.4615 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | * | 81.2847 | 76.3062 | 86.9582 | 90.3597 | 2293 | 712 | 2307 | 346 | 22 | 6.3584 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | het | 80.2443 | 77.5134 | 83.1746 | 91.4579 | 1303 | 378 | 1310 | 265 | 10 | 3.7736 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | hetalt | 38.7454 | 26.7857 | 70.0000 | 97.4795 | 30 | 82 | 28 | 12 | 6 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | homalt | 85.7005 | 79.2079 | 93.3526 | 86.1508 | 960 | 252 | 969 | 69 | 6 | 8.6957 | |
| gduggal-snapvard | INDEL | * | map_siren | * | 85.9947 | 88.0027 | 84.0764 | 84.1625 | 6521 | 889 | 7355 | 1393 | 670 | 48.0976 | |
| gduggal-snapvard | INDEL | * | map_siren | het | 85.6604 | 93.9663 | 78.7036 | 86.4515 | 4236 | 272 | 4978 | 1347 | 630 | 46.7706 | |
| gduggal-snapvard | INDEL | * | map_siren | hetalt | 0.0000 | 32.7935 | 0.0000 | 0.0000 | 81 | 166 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_siren | homalt | 89.9289 | 83.0132 | 98.1015 | 71.6674 | 2204 | 451 | 2377 | 46 | 40 | 86.9565 | |
| gduggal-snapplat | INDEL | I16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 86 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 49 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 21 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | ti | map_siren | * | 97.1306 | 96.0829 | 98.2013 | 65.7243 | 96424 | 3931 | 96473 | 1767 | 855 | 48.3871 | |
| gduggal-snapplat | SNP | ti | map_siren | het | 96.8090 | 96.4253 | 97.1959 | 70.5211 | 60152 | 2230 | 60242 | 1738 | 830 | 47.7560 | |
| gduggal-snapplat | SNP | ti | map_siren | hetalt | 89.5492 | 91.2281 | 87.9310 | 76.7068 | 52 | 5 | 51 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_siren | homalt | 97.6833 | 95.5270 | 99.9392 | 52.4384 | 36220 | 1696 | 36180 | 22 | 18 | 81.8182 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | * | 27.1540 | 17.0492 | 66.6667 | 90.7063 | 52 | 253 | 50 | 25 | 2 | 8.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | het | 25.8366 | 16.7832 | 56.0976 | 90.6818 | 24 | 119 | 23 | 18 | 0 | 0.0000 | |