PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80451-80500 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D6_15 | map_siren | hetalt | 97.4093 | 94.9495 | 100.0000 | 75.7106 | 94 | 5 | 94 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0796 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D16_PLUS | map_siren | * | 93.3991 | 94.4056 | 92.4138 | 94.9653 | 135 | 8 | 134 | 11 | 2 | 18.1818 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | het | 91.7899 | 96.1538 | 87.8049 | 95.9883 | 75 | 3 | 72 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.7381 | 27 | 4 | 29 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_siren | homalt | 97.0588 | 97.0588 | 97.0588 | 94.9102 | 33 | 1 | 33 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C16_PLUS | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 73.1959 | 94.5105 | 0 | 0 | 71 | 26 | 14 | 53.8462 | |
| cchapple-custom | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 65.7895 | 94.4888 | 0 | 0 | 50 | 26 | 14 | 53.8462 | |
| cchapple-custom | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5876 | 0 | 0 | 21 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_siren | * | 97.2258 | 97.5978 | 96.8567 | 81.1585 | 7232 | 178 | 7426 | 241 | 69 | 28.6307 | |
| cchapple-custom | INDEL | * | map_siren | het | 96.6860 | 97.7595 | 95.6358 | 82.3179 | 4407 | 101 | 4821 | 220 | 56 | 25.4545 | |
| cchapple-custom | INDEL | * | map_siren | hetalt | 0.0000 | 88.6640 | 0.0000 | 0.0000 | 219 | 28 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_siren | homalt | 98.6746 | 98.1544 | 99.2003 | 78.4454 | 2606 | 49 | 2605 | 21 | 13 | 61.9048 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | * | 99.3016 | 99.2346 | 99.3688 | 80.4976 | 2982 | 23 | 2991 | 19 | 5 | 26.3158 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | het | 99.0779 | 98.9292 | 99.2271 | 81.4696 | 1663 | 18 | 1669 | 13 | 1 | 7.6923 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 86.1499 | 109 | 3 | 109 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_siren | homalt | 99.6711 | 99.8350 | 99.5078 | 78.1149 | 1210 | 2 | 1213 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | SNP | * | map_siren | * | 99.5992 | 99.6902 | 99.5084 | 55.5562 | 145775 | 453 | 145752 | 720 | 102 | 14.1667 | |
| bgallagher-sentieon | SNP | * | map_siren | het | 99.4455 | 99.6483 | 99.2436 | 58.2943 | 90671 | 320 | 90657 | 691 | 77 | 11.1433 | |
| bgallagher-sentieon | SNP | * | map_siren | hetalt | 98.1132 | 96.2963 | 100.0000 | 69.5312 | 78 | 3 | 78 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_siren | homalt | 99.8557 | 99.7643 | 99.9473 | 50.0857 | 55026 | 130 | 55017 | 29 | 25 | 86.2069 | |
| bgallagher-sentieon | SNP | ti | map_siren | * | 99.6181 | 99.6801 | 99.5561 | 54.0168 | 100034 | 321 | 100019 | 446 | 66 | 14.7982 | |
| bgallagher-sentieon | SNP | ti | map_siren | het | 99.4766 | 99.6377 | 99.3160 | 56.6817 | 62156 | 226 | 62147 | 428 | 50 | 11.6822 | |
| bgallagher-sentieon | SNP | ti | map_siren | hetalt | 98.2143 | 96.4912 | 100.0000 | 68.3908 | 55 | 2 | 55 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_siren | homalt | 99.8535 | 99.7547 | 99.9524 | 48.7705 | 37823 | 93 | 37817 | 18 | 16 | 88.8889 | |
| bgallagher-sentieon | SNP | tv | map_siren | * | 99.5565 | 99.7083 | 99.4051 | 58.5993 | 45796 | 134 | 45788 | 274 | 36 | 13.1387 | |
| bgallagher-sentieon | SNP | tv | map_siren | het | 99.3778 | 99.6714 | 99.0859 | 61.4179 | 28515 | 94 | 28510 | 263 | 27 | 10.2662 | |
| bgallagher-sentieon | SNP | tv | map_siren | hetalt | 98.1132 | 96.2963 | 100.0000 | 69.5312 | 78 | 3 | 78 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_siren | homalt | 99.8607 | 99.7854 | 99.9361 | 52.7521 | 17203 | 37 | 17200 | 11 | 9 | 81.8182 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | * | 96.6887 | 95.7377 | 97.6589 | 84.7837 | 292 | 13 | 292 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.5103 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 78.1046 | 67 | 5 | 67 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_siren | homalt | 96.7391 | 98.8889 | 94.6809 | 85.2201 | 89 | 1 | 89 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | * | 97.5395 | 97.4460 | 97.6331 | 85.2014 | 496 | 13 | 495 | 12 | 2 | 16.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | het | 97.3388 | 98.2143 | 96.4789 | 87.3553 | 275 | 5 | 274 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | hetalt | 96.9072 | 94.9495 | 98.9474 | 74.3243 | 94 | 5 | 94 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.1975 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.5926 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 91.6667 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.0968 | 15 | 1 | 16 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.3846 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |