PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8001-8050 / 86044 show all | |||||||||||||||
rpoplin-dv42 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | SNP | tv | HG002compoundhet | * | 96.9959 | 94.2620 | 99.8931 | 47.1699 | 8411 | 512 | 8410 | 9 | 5 | 55.5556 | |
raldana-dualsentieon | SNP | tv | HG002compoundhet | het | 94.2957 | 89.3216 | 99.8564 | 53.2191 | 4174 | 499 | 4172 | 6 | 3 | 50.0000 | |
raldana-dualsentieon | SNP | tv | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.0708 | 858 | 4 | 858 | 0 | 0 | ||
raldana-dualsentieon | SNP | tv | HG002compoundhet | homalt | 99.8228 | 99.7344 | 99.9113 | 42.6999 | 3379 | 9 | 3380 | 3 | 2 | 66.6667 | |
ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | * | 61.2798 | 52.8513 | 72.9065 | 39.3574 | 4773 | 4258 | 4954 | 1841 | 1725 | 93.6991 | |
ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | het | 61.6175 | 85.1636 | 48.2714 | 46.2388 | 729 | 127 | 1480 | 1586 | 1544 | 97.3518 | |
ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | hetalt | 65.8129 | 49.3191 | 98.8822 | 29.8693 | 4020 | 4131 | 3450 | 39 | 30 | 76.9231 | |
ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | homalt | 18.1818 | 100.0000 | 10.0000 | 54.4592 | 24 | 0 | 24 | 216 | 151 | 69.9074 | |
ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | * | 93.3379 | 91.5109 | 95.2392 | 35.4681 | 8031 | 745 | 8042 | 402 | 334 | 83.0846 | |
ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | het | 71.9355 | 85.0962 | 62.3003 | 78.5616 | 177 | 31 | 195 | 118 | 77 | 65.2542 | |
ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | hetalt | 95.3870 | 91.6833 | 99.4026 | 27.8852 | 7827 | 710 | 7820 | 47 | 42 | 89.3617 | |
ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 18.3051 | 87.0968 | 10.2273 | 63.1285 | 27 | 4 | 27 | 237 | 215 | 90.7173 | |
ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | * | 69.2944 | 67.8709 | 70.7788 | 60.8775 | 8304 | 3931 | 8388 | 3463 | 3380 | 97.6032 | |
ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | het | 53.2922 | 85.5324 | 38.7035 | 48.7795 | 1478 | 250 | 2006 | 3177 | 3125 | 98.3632 | |
ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | hetalt | 77.8263 | 64.0760 | 99.0905 | 66.4524 | 6546 | 3670 | 6101 | 56 | 47 | 83.9286 | |
ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | homalt | 69.9841 | 96.2199 | 54.9902 | 71.9231 | 280 | 11 | 281 | 230 | 208 | 90.4348 | |
ndellapenna-hhga | INDEL | I1_5 | HG002compoundhet | * | 95.9469 | 94.5452 | 97.3908 | 62.1995 | 11682 | 674 | 11683 | 313 | 258 | 82.4281 | |
ndellapenna-hhga | INDEL | I1_5 | HG002compoundhet | het | 88.3547 | 89.0588 | 87.6616 | 81.8124 | 757 | 93 | 746 | 105 | 65 | 61.9048 | |
ndellapenna-hhga | INDEL | I1_5 | HG002compoundhet | hetalt | 97.1229 | 94.8287 | 99.5310 | 57.0294 | 10599 | 578 | 10611 | 50 | 44 | 88.0000 | |
ndellapenna-hhga | INDEL | I1_5 | HG002compoundhet | homalt | 80.1968 | 99.0881 | 67.3554 | 78.4506 | 326 | 3 | 326 | 158 | 149 | 94.3038 | |
ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | * | 63.8133 | 53.4814 | 79.0931 | 40.7537 | 1252 | 1089 | 1343 | 355 | 284 | 80.0000 | |
ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | het | 77.8675 | 83.4568 | 72.9798 | 46.7026 | 338 | 67 | 578 | 214 | 199 | 92.9907 | |
ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | hetalt | 63.9739 | 47.1473 | 99.4764 | 32.8056 | 909 | 1019 | 760 | 4 | 3 | 75.0000 | |
ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.6667 | 62.5000 | 3.5211 | 41.5638 | 5 | 3 | 5 | 137 | 82 | 59.8540 | |
ndellapenna-hhga | SNP | * | HG002compoundhet | * | 98.3720 | 97.8158 | 98.9346 | 39.5539 | 25258 | 564 | 25258 | 272 | 233 | 85.6618 | |
ndellapenna-hhga | SNP | * | HG002compoundhet | het | 98.0271 | 96.5510 | 99.5491 | 42.9549 | 13689 | 489 | 13687 | 62 | 36 | 58.0645 | |
ndellapenna-hhga | SNP | * | HG002compoundhet | hetalt | 99.3579 | 98.7239 | 100.0000 | 23.5400 | 851 | 11 | 851 | 0 | 0 | ||
ndellapenna-hhga | SNP | * | HG002compoundhet | homalt | 98.7381 | 99.4064 | 98.0787 | 35.7852 | 10718 | 64 | 10720 | 210 | 197 | 93.8095 | |
ndellapenna-hhga | SNP | ti | HG002compoundhet | * | 98.5659 | 98.1119 | 99.0241 | 34.3630 | 17148 | 330 | 17148 | 169 | 140 | 82.8402 | |
ndellapenna-hhga | SNP | ti | HG002compoundhet | het | 98.2624 | 96.9805 | 99.5786 | 37.2500 | 9218 | 287 | 9216 | 39 | 21 | 53.8462 | |
ndellapenna-hhga | SNP | ti | HG002compoundhet | hetalt | 99.3043 | 98.6183 | 100.0000 | 23.0458 | 571 | 8 | 571 | 0 | 0 | ||
ndellapenna-hhga | SNP | ti | HG002compoundhet | homalt | 98.8916 | 99.5266 | 98.2646 | 31.2248 | 7359 | 35 | 7361 | 130 | 119 | 91.5385 | |
ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | * | 86.2940 | 82.1745 | 90.8483 | 50.5089 | 1761 | 382 | 1767 | 178 | 133 | 74.7191 | |
ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | het | 51.2283 | 72.3404 | 39.6552 | 84.3243 | 34 | 13 | 46 | 70 | 55 | 78.5714 | |
ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.0250 | 82.3698 | 99.2490 | 40.2898 | 1724 | 369 | 1718 | 13 | 9 | 69.2308 | |
ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | homalt | 5.9406 | 100.0000 | 3.0612 | 66.3230 | 3 | 0 | 3 | 95 | 69 | 72.6316 | |
raldana-dualsentieon | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | * | 92.4081 | 89.1741 | 95.8856 | 50.9476 | 1911 | 232 | 1911 | 82 | 81 | 98.7805 | |
raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | het | 83.6199 | 89.3617 | 78.5714 | 93.1540 | 42 | 5 | 22 | 6 | 6 | 100.0000 | |
raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | hetalt | 94.2662 | 89.1543 | 100.0000 | 44.8215 | 1866 | 227 | 1886 | 0 | 0 | ||
raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | homalt | 7.3171 | 100.0000 | 3.7975 | 66.5254 | 3 | 0 | 3 | 76 | 75 | 98.6842 | |
raldana-dualsentieon | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
raldana-dualsentieon | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 |