PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80401-80450 / 86044 show all
asubramanian-gatkINDELD16_PLUSmap_siren*
92.1758
90.9091
93.4783
95.3892
1301312991
11.1111
asubramanian-gatkINDELD16_PLUSmap_sirenhet
90.9390
92.3077
89.6104
96.4236
7266981
12.5000
asubramanian-gatkINDELD16_PLUSmap_sirenhetalt
91.2281
83.8710
100.0000
84.0000
2652800
asubramanian-gatkINDELD16_PLUSmap_sirenhomalt
95.5224
94.1176
96.9697
95.0376
3223210
0.0000
asubramanian-gatkINDELC1_5map_siren*
0.0000
0.0000
93.7931
00090
0.0000
asubramanian-gatkINDELC1_5map_sirenhet
0.0000
0.0000
95.9184
00040
0.0000
asubramanian-gatkINDELC1_5map_sirenhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC1_5map_sirenhomalt
0.0000
0.0000
89.3617
00050
0.0000
astatham-gatkSNP*map_siren*
93.7139
88.2540
99.8939
58.6796
1290521717612902913767
48.9051
astatham-gatkSNP*map_sirenhet
89.6918
81.4059
99.8557
63.3177
74072169197405810741
38.3178
astatham-gatkSNP*map_sirenhetalt
98.7500
97.5309
100.0000
69.1406
7927900
astatham-gatkSNP*map_sirenhomalt
99.7411
99.5377
99.9454
50.1425
54901255548923026
86.6667
asubramanian-gatkINDEL*map_siren*
93.9319
90.2024
97.9830
94.1412
6684726670413823
16.6667
asubramanian-gatkINDEL*map_sirenhet
91.9143
87.2227
97.1393
86.6717
3932576393911614
12.0690
asubramanian-gatkINDEL*map_sirenhetalt
96.0386
93.1174
99.1489
87.5133
2301723320
0.0000
asubramanian-gatkINDEL*map_sirenhomalt
97.0575
94.9906
99.2163
82.1825
25221332532209
45.0000
asubramanian-gatkINDELC16_PLUSmap_siren*
0.0000
0.0000
99.0566
00010
0.0000
asubramanian-gatkINDELC16_PLUSmap_sirenhet
0.0000
0.0000
98.7654
00010
0.0000
asubramanian-gatkINDELC16_PLUSmap_sirenhetalt
0.0000
100.0000
00000
asubramanian-gatkINDELC16_PLUSmap_sirenhomalt
0.0000
100.0000
00000
astatham-gatkSNPtimap_siren*
94.0656
88.8705
99.9059
56.9785
8918611169891718446
54.7619
astatham-gatkSNPtimap_sirenhet
90.2825
82.3747
99.8698
61.4644
5138710995513786730
44.7761
astatham-gatkSNPtimap_sirenhetalt
99.1150
98.2456
100.0000
68.0000
5615600
astatham-gatkSNPtimap_sirenhomalt
99.7489
99.5437
99.9550
48.8366
37743173377371716
94.1176
astatham-gatkSNPtvmap_siren*
92.9445
86.9192
99.8674
62.0464
399226008399145321
39.6226
astatham-gatkSNPtvmap_sirenhet
88.3820
79.2932
99.8239
66.9200
226855924226804011
27.5000
astatham-gatkSNPtvmap_sirenhetalt
98.7500
97.5309
100.0000
69.1406
7927900
astatham-gatkSNPtvmap_sirenhomalt
99.7239
99.5244
99.9243
52.7924
1715882171551310
76.9231
astatham-gatkINDELI1_5map_siren*
97.3853
95.4077
99.4467
81.4805
28671382876165
31.2500
astatham-gatkINDELI1_5map_sirenhet
95.5862
92.0880
99.3606
82.8978
15481331554101
10.0000
astatham-gatkINDELI1_5map_sirenhetalt
98.6425
97.3214
100.0000
87.1765
109310900
astatham-gatkINDELI1_5map_sirenhomalt
99.6711
99.8350
99.5078
78.3135
12102121364
66.6667
astatham-gatkINDELI6_15map_siren*
95.6376
93.4426
97.9381
85.2956
2852028564
66.6667
astatham-gatkINDELI6_15map_sirenhet
93.7729
89.5105
98.4615
87.4396
1281512821
50.0000
astatham-gatkINDELI6_15map_sirenhetalt
97.1429
94.4444
100.0000
78.4810
6846800
astatham-gatkINDELI6_15map_sirenhomalt
97.2678
98.8889
95.6989
85.1911
8918943
75.0000
astatham-gatkINDELI16_PLUSmap_siren*
94.2920
95.3488
93.2584
92.7642
8248361
16.6667
astatham-gatkINDELI16_PLUSmap_sirenhet
93.0693
95.9184
90.3846
91.9255
4724750
0.0000
astatham-gatkINDELI16_PLUSmap_sirenhetalt
96.7742
93.7500
100.0000
87.2000
1511600
astatham-gatkINDELI16_PLUSmap_sirenhomalt
95.2381
95.2381
95.2381
95.4447
2012011
100.0000
astatham-gatkINDELC1_5map_siren*
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5map_sirenhet
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5map_sirenhetalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDELC1_5map_sirenhomalt
0.0000
0.0000
0.0000
00000
astatham-gatkINDELD1_5map_siren*
97.9977
97.0247
98.9905
82.3184
34241053432356
17.1429
astatham-gatkINDELD1_5map_sirenhet
97.1940
95.7839
98.6462
82.2862
2181962186302
6.6667
astatham-gatkINDELD1_5map_sirenhetalt
96.9325
94.0476
100.0000
90.6176
7957900
astatham-gatkINDELD1_5map_sirenhomalt
99.6154
99.6575
99.5734
81.2660
11644116754
80.0000
astatham-gatkINDELD6_15map_siren*
97.2363
96.8566
97.6190
85.4503
49316492122
16.6667
astatham-gatkINDELD6_15map_sirenhet
96.6183
97.1429
96.0993
87.5935
2728271112
18.1818