PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80351-80400 / 86044 show all
anovak-vgSNPtimap_sirenhetalt
0.0000
29.8246
0.0000
0.0000
1740000
anovak-vgSNPtimap_sirenhomalt
94.0329
89.3343
99.2531
48.3941
33872404433489252225
89.2857
anovak-vgINDELI16_PLUSmap_siren*
33.6000
24.4186
53.8462
69.2913
2165211816
88.8889
anovak-vgINDELI16_PLUSmap_sirenhet
21.4286
12.2449
85.7143
75.8621
643610
0.0000
anovak-vgINDELI16_PLUSmap_sirenhetalt
0.0000
6.2500
0.0000
0.0000
115000
anovak-vgINDELI16_PLUSmap_sirenhomalt
55.0459
66.6667
46.8750
67.3469
147151716
94.1176
anovak-vgINDELI1_5map_siren*
58.1927
58.9351
57.4687
78.9889
17711234178913241029
77.7190
anovak-vgINDELI1_5map_sirenhet
46.4738
35.8715
65.9729
86.5236
603107863432782
25.0765
anovak-vgINDELI1_5map_sirenhetalt
0.0000
32.1429
0.0000
0.0000
3676000
anovak-vgINDELI1_5map_sirenhomalt
68.1692
93.3993
53.6710
71.9974
1132801155997947
94.9850
astatham-gatkINDEL*map_siren*
97.4708
96.1673
98.8100
83.5327
712628471418620
23.2558
astatham-gatkINDEL*map_sirenhet
96.3193
94.2990
98.4281
84.3550
42512574258688
11.7647
astatham-gatkINDEL*map_sirenhetalt
96.8685
93.9271
100.0000
86.9855
2321523400
astatham-gatkINDEL*map_sirenhomalt
99.4364
99.5480
99.3251
81.5279
26431226491812
66.6667
asubramanian-gatkSNPtimap_siren*
78.3158
64.4054
99.8903
68.2204
6463435721646227123
32.3944
asubramanian-gatkSNPtimap_sirenhet
80.0204
66.7709
99.8298
71.1364
4165320729416477123
32.3944
asubramanian-gatkSNPtimap_sirenhetalt
65.8824
49.1228
100.0000
83.6257
28292800
asubramanian-gatkSNPtimap_sirenhomalt
75.4177
60.5364
100.0000
61.0156
22953149632294700
asubramanian-gatkSNPtvmap_siren*
72.2865
56.6449
99.8618
75.5276
2601719913260113612
33.3333
asubramanian-gatkSNPtvmap_sirenhet
74.9187
59.9671
99.8022
78.0195
1715611453171533410
29.4118
asubramanian-gatkSNPtvmap_sirenhetalt
65.0000
48.1481
100.0000
83.7500
39423900
asubramanian-gatkSNPtvmap_sirenhomalt
67.6949
51.1717
99.9773
68.4987
88228418881922
100.0000
asubramanian-gatkSNP*map_siren*
76.4845
61.9738
99.8677
70.7590
90623556059060512035
29.1667
asubramanian-gatkSNP*map_sirenhet
78.4554
64.6317
99.8014
73.5808
58809321825880011733
28.2051
asubramanian-gatkSNP*map_sirenhetalt
65.0000
48.1481
100.0000
84.2105
39423900
asubramanian-gatkSNP*map_sirenhomalt
73.1014
57.6093
99.9906
63.4885
31775233813176632
66.6667
asubramanian-gatkINDELD1_5map_siren*
94.8669
91.8674
98.0688
84.1980
32422873250648
12.5000
asubramanian-gatkINDELD1_5map_sirenhet
93.3358
89.7672
97.1998
84.8319
20442332048595
8.4746
asubramanian-gatkINDELD1_5map_sirenhetalt
97.5610
95.2381
100.0000
90.8987
8048000
asubramanian-gatkINDELD1_5map_sirenhomalt
97.6001
95.7192
99.5563
81.8284
111850112253
60.0000
asubramanian-gatkINDELI16_PLUSmap_siren*
91.5949
88.3721
95.0617
93.1761
76107741
25.0000
asubramanian-gatkINDELI16_PLUSmap_sirenhet
89.3617
85.7143
93.3333
93.1921
4274230
0.0000
asubramanian-gatkINDELI16_PLUSmap_sirenhetalt
96.7742
93.7500
100.0000
87.0968
1511600
asubramanian-gatkINDELI16_PLUSmap_sirenhomalt
92.6829
90.4762
95.0000
95.0249
1921911
100.0000
asubramanian-gatkINDELI1_5map_siren*
93.2137
88.1864
98.8489
83.6431
26503552662317
22.5806
asubramanian-gatkINDELI1_5map_sirenhet
89.9163
82.9863
98.1092
85.7556
13952861401275
18.5185
asubramanian-gatkINDELI1_5map_sirenhetalt
97.2727
95.5357
99.0741
87.9867
107510710
0.0000
asubramanian-gatkINDELI1_5map_sirenhomalt
97.1653
94.7195
99.7407
79.1155
114864115432
66.6667
asubramanian-gatkINDELI6_15map_siren*
94.0200
90.1639
98.2206
86.0753
2753027653
60.0000
asubramanian-gatkINDELI6_15map_sirenhet
91.3236
84.6154
99.1870
88.4507
1212212211
100.0000
asubramanian-gatkINDELI6_15map_sirenhetalt
97.1831
95.8333
98.5714
77.4194
6936910
0.0000
asubramanian-gatkINDELI6_15map_sirenhomalt
95.5056
94.4444
96.5909
86.3142
8558532
66.6667
asubramanian-gatkINDELD6_15map_siren*
94.9597
92.5344
97.5155
86.4857
47138471123
25.0000
asubramanian-gatkINDELD6_15map_sirenhet
94.1539
92.1429
96.2547
88.8191
25822257102
20.0000
asubramanian-gatkINDELD6_15map_sirenhetalt
96.8750
93.9394
100.0000
76.3819
9369400
asubramanian-gatkINDELD6_15map_sirenhomalt
95.2381
92.3077
98.3607
84.5178
1201012021
50.0000
asubramanian-gatkINDELC6_15map_siren*
0.0000
0.0000
95.9459
00030
0.0000
asubramanian-gatkINDELC6_15map_sirenhet
0.0000
0.0000
95.1613
00030
0.0000
asubramanian-gatkINDELC6_15map_sirenhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkINDELC6_15map_sirenhomalt
0.0000
100.0000
00000