PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80301-80350 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_siren | * | 88.5587 | 81.9301 | 96.3544 | 82.1964 | 2462 | 543 | 2643 | 100 | 24 | 24.0000 | |
| qzeng-custom | INDEL | I1_5 | map_siren | het | 87.6104 | 81.4396 | 94.7930 | 85.2134 | 1369 | 312 | 1511 | 83 | 20 | 24.0964 | |
| qzeng-custom | INDEL | I1_5 | map_siren | hetalt | 88.0000 | 78.5714 | 100.0000 | 86.0806 | 88 | 24 | 38 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_siren | homalt | 90.0289 | 82.9208 | 98.4698 | 74.4832 | 1005 | 207 | 1094 | 17 | 4 | 23.5294 | |
| anovak-vg | INDEL | C16_PLUS | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_siren | * | 55.8559 | 43.3566 | 78.4810 | 82.5221 | 62 | 81 | 62 | 17 | 14 | 82.3529 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | het | 65.2174 | 57.6923 | 75.0000 | 77.5439 | 45 | 33 | 48 | 16 | 13 | 81.2500 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 6.4516 | 0.0000 | 0.0000 | 2 | 29 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_siren | homalt | 59.9144 | 44.1176 | 93.3333 | 91.0180 | 15 | 19 | 14 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_siren | * | 87.4723 | 88.4103 | 86.5539 | 80.0641 | 3120 | 409 | 3122 | 485 | 188 | 38.7629 | |
| anovak-vg | INDEL | D1_5 | map_siren | het | 86.2774 | 89.9868 | 82.8617 | 80.2332 | 2049 | 228 | 2079 | 430 | 142 | 33.0233 | |
| anovak-vg | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 32.1429 | 0.0000 | 0.0000 | 27 | 57 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_siren | homalt | 92.1020 | 89.3836 | 94.9909 | 79.6667 | 1044 | 124 | 1043 | 55 | 46 | 83.6364 | |
| anovak-vg | INDEL | D6_15 | map_siren | * | 73.2509 | 67.3870 | 80.2326 | 79.8971 | 343 | 166 | 345 | 85 | 60 | 70.5882 | |
| anovak-vg | INDEL | D6_15 | map_siren | het | 77.1497 | 77.5000 | 76.8025 | 78.9021 | 217 | 63 | 245 | 74 | 50 | 67.5676 | |
| anovak-vg | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 25.2525 | 0.0000 | 0.0000 | 25 | 74 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_siren | homalt | 83.4332 | 77.6923 | 90.0901 | 82.2967 | 101 | 29 | 100 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | * | map_siren | * | 72.9885 | 73.1309 | 72.8467 | 79.6324 | 5419 | 1991 | 5489 | 2046 | 1378 | 67.3509 | |
| anovak-vg | INDEL | * | map_siren | het | 71.2155 | 65.8829 | 77.4874 | 82.2828 | 2970 | 1538 | 3084 | 896 | 298 | 33.2589 | |
| anovak-vg | INDEL | * | map_siren | hetalt | 0.0000 | 27.5304 | 0.0000 | 0.0000 | 68 | 179 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_siren | homalt | 77.1234 | 89.6798 | 67.6512 | 75.5300 | 2381 | 274 | 2405 | 1150 | 1080 | 93.9130 | |
| anovak-vg | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 38.4615 | 96.4187 | 0 | 0 | 5 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 95.9322 | 0 | 0 | 4 | 8 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 98.5294 | 0 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_siren | * | 52.3607 | 48.1967 | 57.3123 | 74.7000 | 147 | 158 | 145 | 108 | 71 | 65.7407 | |
| anovak-vg | INDEL | I6_15 | map_siren | het | 45.1108 | 34.9650 | 63.5514 | 79.0607 | 50 | 93 | 68 | 39 | 11 | 28.2051 | |
| anovak-vg | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 30.5556 | 0.0000 | 0.0000 | 22 | 50 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_siren | homalt | 64.5973 | 83.3333 | 52.7397 | 70.1431 | 75 | 15 | 77 | 69 | 60 | 86.9565 | |
| anovak-vg | SNP | tv | map_siren | * | 87.1130 | 91.2040 | 83.3733 | 62.1288 | 41890 | 4040 | 41755 | 8327 | 1807 | 21.7005 | |
| anovak-vg | SNP | tv | map_siren | het | 83.8130 | 92.8414 | 76.3848 | 65.0646 | 26561 | 2048 | 26517 | 8198 | 1714 | 20.9075 | |
| anovak-vg | SNP | tv | map_siren | hetalt | 0.0000 | 25.9259 | 0.0000 | 0.0000 | 21 | 60 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_siren | homalt | 93.6911 | 88.7935 | 99.1605 | 53.2549 | 15308 | 1932 | 15238 | 129 | 93 | 72.0930 | |
| anovak-vg | SNP | * | map_siren | * | 88.0035 | 90.6441 | 85.5124 | 59.7358 | 132547 | 13681 | 130863 | 22171 | 5290 | 23.8600 | |
| anovak-vg | SNP | * | map_siren | het | 84.8820 | 91.5981 | 79.0836 | 63.1144 | 83346 | 7645 | 82394 | 21792 | 4974 | 22.8249 | |
| anovak-vg | SNP | * | map_siren | hetalt | 0.0000 | 25.9259 | 0.0000 | 0.0000 | 21 | 60 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_siren | homalt | 93.9262 | 89.1653 | 99.2241 | 49.9600 | 49180 | 5976 | 48469 | 379 | 316 | 83.3773 | |
| astatham-gatk | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | map_siren | * | 88.3716 | 90.3532 | 86.4749 | 58.5181 | 90674 | 9681 | 89812 | 14047 | 3559 | 25.3364 | |
| anovak-vg | SNP | ti | map_siren | het | 85.3428 | 91.0279 | 80.3260 | 62.0963 | 56785 | 5597 | 56323 | 13795 | 3334 | 24.1682 | |