PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80251-80300 / 86044 show all
rpoplin-dv42SNPtimap_sirenhetalt
98.2759
100.0000
96.6102
78.7004
5705722
100.0000
rpoplin-dv42SNPtimap_sirenhomalt
99.8060
99.7283
99.8838
52.4445
37813103378144442
95.4545
rpoplin-dv42SNPtvmap_siren*
99.5468
99.4818
99.6119
56.8797
456922384568617889
50.0000
rpoplin-dv42SNPtvmap_sirenhet
99.4388
99.4093
99.4683
57.2644
284401692843615265
42.7632
rpoplin-dv42SNPtvmap_sirenhetalt
98.1818
100.0000
96.4286
79.8561
8108133
100.0000
rpoplin-dv42SNPtvmap_sirenhomalt
99.7328
99.5998
99.8662
55.9755
1717169171692321
91.3043
rpoplin-dv42INDELD6_15map_siren*
96.3403
95.6778
97.0120
83.7698
48722487156
40.0000
rpoplin-dv42INDELD6_15map_sirenhet
96.0854
96.4286
95.7447
85.9911
27010270125
41.6667
rpoplin-dv42INDELD6_15map_sirenhetalt
95.2880
91.9192
98.9130
72.8614
9189111
100.0000
rpoplin-dv42INDELD6_15map_sirenhomalt
97.6744
96.9231
98.4375
82.7260
126412620
0.0000
rpoplin-dv42INDELC6_15map_siren*
0.0000
100.0000
00000
rpoplin-dv42INDELC6_15map_sirenhet
0.0000
0.0000
0.0000
00000
rpoplin-dv42INDELC6_15map_sirenhetalt
0.0000
100.0000
00000
rpoplin-dv42INDELC6_15map_sirenhomalt
0.0000
100.0000
00000
rpoplin-dv42INDELD1_5map_siren*
99.0944
99.1782
99.0107
80.6593
35002935033515
42.8571
rpoplin-dv42INDELD1_5map_sirenhet
99.0134
99.1217
98.9054
80.0820
2257202259257
28.0000
rpoplin-dv42INDELD1_5map_sirenhetalt
95.7055
92.8571
98.7342
91.2804
7867811
100.0000
rpoplin-dv42INDELD1_5map_sirenhomalt
99.4879
99.7432
99.2340
80.1520
11653116697
77.7778
rpoplin-dv42SNP*map_siren*
99.6224
99.5097
99.7354
54.5067
145511717145497386225
58.2902
rpoplin-dv42SNP*map_sirenhet
99.5263
99.4010
99.6518
54.9841
9044654590433316159
50.3165
rpoplin-dv42SNP*map_sirenhetalt
98.1818
100.0000
96.4286
79.8561
8108133
100.0000
rpoplin-dv42SNP*map_sirenhomalt
99.7831
99.6882
99.8783
53.6066
54984172549836763
94.0299
qzeng-customSNPtimap_siren*
92.5421
86.8188
99.0732
61.8902
871271322886370808570
70.5446
qzeng-customSNPtimap_sirenhet
92.2591
86.5538
98.7696
67.2335
53994838853703669449
67.1151
qzeng-customSNPtimap_sirenhetalt
86.0000
75.4386
100.0000
84.0467
43144100
qzeng-customSNPtimap_sirenhomalt
93.0187
87.2719
99.5758
47.6263
33090482632626139121
87.0504
qzeng-customSNP*map_siren*
92.3867
86.6004
99.0016
63.6130
126634195941250471261903
71.6098
qzeng-customSNP*map_sirenhet
92.1648
86.4602
98.6753
68.8551
7867112320779141046710
67.8776
qzeng-customSNP*map_sirenhetalt
86.0912
76.5432
98.3607
83.9474
62196010
0.0000
qzeng-customSNP*map_sirenhomalt
92.7642
86.8464
99.5474
49.2732
47901725547073214193
90.1869
qzeng-customSNPtvmap_siren*
92.0283
86.1093
98.8212
67.3017
39550638039401470339
72.1277
qzeng-customSNPtvmap_sirenhet
91.9469
86.2561
98.4416
72.2639
24677393224636390264
67.6923
qzeng-customSNPtvmap_sirenhetalt
86.0912
76.5432
98.3607
83.9474
62196010
0.0000
qzeng-customSNPtvmap_sirenhomalt
92.1926
85.9107
99.4656
52.8075
148112429147057975
94.9367
qzeng-customINDELD1_5map_siren*
93.2868
89.0337
97.9666
83.5685
314238732286743
64.1791
qzeng-customINDELD1_5map_sirenhet
92.9621
88.8889
97.4265
85.9785
202425321205632
57.1429
qzeng-customINDELD1_5map_sirenhetalt
90.1961
82.1429
100.0000
94.0476
6915500
qzeng-customINDELD1_5map_sirenhomalt
94.1879
89.8116
99.0126
74.9663
104911911031111
100.0000
qzeng-customINDELD6_15map_siren*
82.8301
89.5874
77.0206
83.5033
4565348614521
14.4828
qzeng-customINDELD6_15map_sirenhet
82.9558
91.7857
75.6757
84.8504
2572336411717
14.5299
qzeng-customINDELD6_15map_sirenhetalt
0.0000
82.8283
0.0000
0.0000
8217000
qzeng-customINDELD6_15map_sirenhomalt
85.4475
90.0000
81.3333
76.9231
11713122284
14.2857
qzeng-customINDELI6_15map_siren*
71.0638
81.6393
62.9139
77.5520
249562851688
4.7619
qzeng-customINDELI6_15map_sirenhet
67.1265
81.8182
56.9079
78.8889
117261731317
5.3435
qzeng-customINDELI6_15map_sirenhetalt
84.8000
73.6111
100.0000
78.3333
53192600
qzeng-customINDELI6_15map_sirenhomalt
77.8370
87.7778
69.9187
73.1441
791186371
2.7027
qzeng-customINDELI16_PLUSmap_siren*
65.7764
70.9302
61.3208
81.7556
612565415
12.1951
qzeng-customINDELI16_PLUSmap_sirenhet
63.1714
73.4694
55.4054
79.7814
361341334
12.1212
qzeng-customINDELI16_PLUSmap_sirenhetalt
76.9231
62.5000
100.0000
84.0909
106700
qzeng-customINDELI16_PLUSmap_sirenhomalt
69.6721
71.4286
68.0000
85.3801
1561781
12.5000