PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80051-80100 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | map_siren | hetalt | 96.0000 | 92.3077 | 100.0000 | 86.8270 | 228 | 19 | 230 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_siren | homalt | 99.4733 | 99.4727 | 99.4739 | 78.7290 | 2641 | 14 | 2647 | 14 | 9 | 64.2857 | |
| hfeng-pmm3 | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | tv | map_siren | * | 99.6626 | 99.6995 | 99.6257 | 59.0414 | 45792 | 138 | 45784 | 172 | 23 | 13.3721 | |
| hfeng-pmm2 | SNP | tv | map_siren | het | 99.5196 | 99.5806 | 99.4588 | 60.5491 | 28489 | 120 | 28484 | 155 | 14 | 9.0323 | |
| hfeng-pmm2 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | map_siren | homalt | 99.9014 | 99.9014 | 99.9014 | 56.1199 | 17223 | 17 | 17220 | 17 | 9 | 52.9412 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | * | 96.6555 | 94.7541 | 98.6348 | 83.9364 | 289 | 16 | 289 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 85.3392 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.7583 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_siren | homalt | 97.8022 | 98.8889 | 96.7391 | 84.1105 | 89 | 1 | 89 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | map_siren | * | 99.6860 | 99.6642 | 99.7079 | 54.6933 | 100018 | 337 | 100003 | 293 | 39 | 13.3106 | |
| hfeng-pmm2 | SNP | ti | map_siren | het | 99.5502 | 99.5223 | 99.5781 | 56.1068 | 62084 | 298 | 62075 | 263 | 19 | 7.2243 | |
| hfeng-pmm2 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_siren | homalt | 99.9103 | 99.8998 | 99.9208 | 52.1071 | 37878 | 38 | 37872 | 30 | 20 | 66.6667 | |
| ndellapenna-hhga | SNP | ti | map_siren | * | 99.5376 | 99.2028 | 99.8746 | 51.9628 | 99555 | 800 | 99557 | 125 | 60 | 48.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | het | 99.3687 | 98.9067 | 99.8350 | 52.2716 | 61700 | 682 | 61701 | 102 | 39 | 38.2353 | |
| ndellapenna-hhga | SNP | ti | map_siren | hetalt | 92.5926 | 87.7193 | 98.0392 | 75.4808 | 50 | 7 | 50 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | homalt | 99.8244 | 99.7072 | 99.9418 | 51.3860 | 37805 | 111 | 37806 | 22 | 20 | 90.9091 | |
| ndellapenna-hhga | SNP | tv | map_siren | * | 99.4997 | 99.1596 | 99.8422 | 55.1910 | 45544 | 386 | 45544 | 72 | 30 | 41.6667 | |
| ndellapenna-hhga | SNP | tv | map_siren | het | 99.3169 | 98.8465 | 99.7918 | 55.1017 | 28279 | 330 | 28279 | 59 | 19 | 32.2034 | |
| ndellapenna-hhga | SNP | tv | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_siren | homalt | 99.8287 | 99.7274 | 99.9303 | 55.1755 | 17193 | 47 | 17193 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | * | map_siren | * | 89.0924 | 85.8165 | 92.6283 | 83.9353 | 6359 | 1051 | 6823 | 543 | 116 | 21.3628 | |
| qzeng-custom | INDEL | * | map_siren | het | 88.2436 | 85.8917 | 90.7279 | 86.0479 | 3872 | 636 | 4325 | 442 | 93 | 21.0407 | |
| qzeng-custom | INDEL | * | map_siren | hetalt | 87.7273 | 78.1377 | 100.0000 | 88.1671 | 193 | 54 | 51 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_siren | homalt | 90.9652 | 86.4030 | 96.0361 | 77.3592 | 2294 | 361 | 2447 | 101 | 23 | 22.7723 | |
| qzeng-custom | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 83.2258 | 0 | 0 | 0 | 26 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 80.2198 | 0 | 0 | 0 | 18 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 8 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | map_siren | * | 50.9653 | 84.6154 | 36.4641 | 88.9936 | 121 | 22 | 132 | 230 | 13 | 5.6522 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | het | 51.9122 | 88.4615 | 36.7347 | 86.9217 | 69 | 9 | 108 | 186 | 12 | 6.4516 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 74.1935 | 0.0000 | 0.0000 | 23 | 8 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_siren | homalt | 49.9283 | 85.2941 | 35.2941 | 93.4678 | 29 | 5 | 24 | 44 | 1 | 2.2727 | |
| qzeng-custom | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 80.0000 | 98.8318 | 0 | 0 | 8 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 75.0000 | 98.8604 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 99.2537 | 0 | 0 | 1 | 0 | 0 | ||