PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80001-80050 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | map_siren | * | 94.6492 | 93.0070 | 96.3504 | 92.5503 | 133 | 10 | 132 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_siren | het | 96.0512 | 94.8718 | 97.2603 | 93.9167 | 74 | 4 | 71 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.4196 | 26 | 5 | 28 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | homalt | 94.2857 | 97.0588 | 91.6667 | 92.7419 | 33 | 1 | 33 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | * | 94.5527 | 90.6977 | 98.7500 | 90.1840 | 78 | 8 | 79 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | het | 91.3043 | 85.7143 | 97.6744 | 87.6791 | 42 | 7 | 42 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.4951 | 16 | 0 | 17 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 94.4904 | 20 | 1 | 20 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D6_15 | map_siren | * | 97.7160 | 96.6601 | 98.7952 | 83.3612 | 492 | 17 | 492 | 6 | 1 | 16.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | map_siren | het | 98.0322 | 97.8571 | 98.2079 | 85.3850 | 274 | 6 | 274 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_siren | hetalt | 96.3351 | 92.9293 | 100.0000 | 76.4706 | 92 | 7 | 92 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_siren | homalt | 98.0545 | 96.9231 | 99.2126 | 81.6739 | 126 | 4 | 126 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 91.9499 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 90.9247 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.9699 | 15 | 1 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 94.7631 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | * | 99.2171 | 99.0017 | 99.4335 | 80.3741 | 2975 | 30 | 2984 | 17 | 4 | 23.5294 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | het | 98.9267 | 98.5723 | 99.2836 | 81.6659 | 1657 | 24 | 1663 | 12 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.5429 | 109 | 3 | 109 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_siren | homalt | 99.6707 | 99.7525 | 99.5892 | 76.9508 | 1209 | 3 | 1212 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | * | 91.3733 | 93.0070 | 89.7959 | 93.4812 | 133 | 10 | 132 | 15 | 1 | 6.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | het | 91.1204 | 94.8718 | 87.6543 | 94.8375 | 74 | 4 | 71 | 10 | 1 | 10.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.9412 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | homalt | 90.1408 | 94.1176 | 86.4865 | 92.8295 | 32 | 2 | 32 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | * | 99.1528 | 99.3483 | 98.9580 | 80.2591 | 3506 | 23 | 3514 | 37 | 6 | 16.2162 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | het | 98.9959 | 99.4291 | 98.5665 | 80.1620 | 2264 | 13 | 2269 | 33 | 2 | 6.0606 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 91.0138 | 78 | 6 | 78 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_siren | homalt | 99.6580 | 99.6575 | 99.6584 | 78.7708 | 1164 | 4 | 1167 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | * | map_siren | * | 99.6789 | 99.6758 | 99.6819 | 56.1450 | 145754 | 474 | 145731 | 465 | 62 | 13.3333 | |
| hfeng-pmm2 | SNP | * | map_siren | het | 99.5406 | 99.5406 | 99.5405 | 57.6094 | 90573 | 418 | 90559 | 418 | 33 | 7.8947 | |
| hfeng-pmm2 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_siren | homalt | 99.9075 | 99.9003 | 99.9148 | 53.4382 | 55101 | 55 | 55092 | 47 | 29 | 61.7021 | |
| hfeng-pmm3 | INDEL | * | map_siren | * | 99.0674 | 98.8394 | 99.2964 | 80.1151 | 7324 | 86 | 7339 | 52 | 13 | 25.0000 | |
| hfeng-pmm3 | INDEL | * | map_siren | het | 98.9897 | 98.8243 | 99.1556 | 80.3605 | 4455 | 53 | 4462 | 38 | 4 | 10.5263 | |