PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7951-8000 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 57.4074 | 0 | 0 | 0 | 23 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | * | 75.9486 | 81.4609 | 71.1351 | 32.7367 | 1907 | 434 | 2112 | 857 | 326 | 38.0397 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | het | 84.4943 | 95.5556 | 75.7282 | 32.4836 | 387 | 18 | 2106 | 675 | 234 | 34.6667 | |
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 78.4232 | 0.0000 | 0.0000 | 1512 | 416 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.1856 | 100.0000 | 3.1915 | 36.2712 | 8 | 0 | 6 | 182 | 92 | 50.5495 | |
| qzeng-custom | INDEL | * | HG002compoundhet | * | 82.2978 | 79.3825 | 85.4354 | 55.6867 | 23783 | 6177 | 36410 | 6207 | 4106 | 66.1511 | |
| qzeng-custom | INDEL | * | HG002compoundhet | het | 90.0667 | 93.8691 | 86.5604 | 55.7571 | 3843 | 251 | 30091 | 4672 | 2782 | 59.5462 | |
| qzeng-custom | INDEL | * | HG002compoundhet | hetalt | 86.4434 | 76.5369 | 99.2955 | 48.8192 | 19272 | 5908 | 5638 | 40 | 29 | 72.5000 | |
| qzeng-custom | INDEL | * | HG002compoundhet | homalt | 47.3681 | 97.3761 | 31.2960 | 66.5488 | 668 | 18 | 681 | 1495 | 1295 | 86.6221 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 41.1765 | 91.0526 | 0 | 0 | 7 | 10 | 1 | 10.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 45.4545 | 92.3611 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.4762 | 0 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 84.0000 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| ndellapenna-hhga | SNP | tv | HG002compoundhet | * | 98.0516 | 97.2879 | 98.8274 | 47.0684 | 8681 | 242 | 8681 | 103 | 93 | 90.2913 | |
| ndellapenna-hhga | SNP | tv | HG002compoundhet | het | 97.5455 | 95.6773 | 99.4882 | 51.9512 | 4471 | 202 | 4471 | 23 | 15 | 65.2174 | |
| ndellapenna-hhga | SNP | tv | HG002compoundhet | hetalt | 99.3579 | 98.7239 | 100.0000 | 23.5400 | 851 | 11 | 851 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | HG002compoundhet | homalt | 98.4034 | 99.1440 | 97.6737 | 43.8897 | 3359 | 29 | 3359 | 80 | 78 | 97.5000 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | * | 88.1713 | 85.4271 | 91.0977 | 64.3947 | 10452 | 1783 | 11502 | 1124 | 856 | 76.1566 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | het | 92.9212 | 93.9236 | 91.9400 | 64.3165 | 1623 | 105 | 11042 | 968 | 705 | 72.8306 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | hetalt | 91.1048 | 83.6629 | 100.0000 | 61.9355 | 8547 | 1669 | 177 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | homalt | 77.4248 | 96.9072 | 64.4647 | 67.2143 | 282 | 9 | 283 | 156 | 151 | 96.7949 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | * | 89.2857 | 100.0000 | 80.6452 | 90.2054 | 1 | 0 | 50 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 82.9787 | 90.9615 | 0 | 0 | 39 | 8 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | hetalt | 77.7778 | 100.0000 | 63.6364 | 86.7470 | 1 | 0 | 7 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 100.0000 | 86.6667 | 0 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | HG002compoundhet | * | 98.2432 | 96.6243 | 99.9172 | 34.4311 | 16888 | 590 | 16889 | 14 | 10 | 71.4286 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | het | 96.7997 | 93.8769 | 99.9104 | 38.0325 | 8923 | 582 | 8924 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 21.4966 | 577 | 2 | 577 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | HG002compoundhet | homalt | 99.9189 | 99.9189 | 99.9189 | 30.4421 | 7388 | 6 | 7388 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | SNP | * | HG002compoundhet | * | 97.7792 | 95.7401 | 99.9071 | 39.6169 | 24722 | 1100 | 24722 | 23 | 15 | 65.2174 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | het | 95.9874 | 92.3755 | 99.8932 | 43.8424 | 13097 | 1081 | 13096 | 14 | 7 | 50.0000 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | hetalt | 99.7674 | 99.5360 | 100.0000 | 22.0708 | 858 | 4 | 858 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | HG002compoundhet | homalt | 99.8887 | 99.8609 | 99.9165 | 34.8192 | 10767 | 15 | 10768 | 9 | 8 | 88.8889 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | * | 93.3591 | 92.7336 | 93.9930 | 68.4001 | 27783 | 2177 | 27758 | 1774 | 1747 | 98.4780 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | het | 81.4607 | 94.3576 | 71.6654 | 76.0047 | 3863 | 231 | 3804 | 1504 | 1483 | 98.6037 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | hetalt | 95.8717 | 92.3153 | 99.7130 | 50.6553 | 23245 | 1935 | 23276 | 67 | 66 | 98.5075 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | homalt | 86.3667 | 98.3965 | 76.9580 | 80.9842 | 675 | 11 | 678 | 203 | 198 | 97.5369 | |
| rpoplin-dv42 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | * | 92.3351 | 89.3573 | 95.5182 | 36.0215 | 7842 | 934 | 7843 | 368 | 366 | 99.4565 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | het | 75.0365 | 79.3269 | 71.1864 | 85.5155 | 165 | 43 | 126 | 51 | 51 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | hetalt | 94.4942 | 89.5631 | 100.0000 | 28.5953 | 7646 | 891 | 7686 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | homalt | 16.3588 | 100.0000 | 8.9080 | 58.9623 | 31 | 0 | 31 | 317 | 315 | 99.3691 | |