PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
751-800 / 86044 show all
gduggal-bwaplatINDELD1_5*hetalt
83.8440
73.7042
97.2186
75.9425
755126947550216214
99.0741
gduggal-bwaplatINDELD1_5*homalt
94.9240
90.7227
99.5332
62.2451
44387453944353208178
85.5769
gduggal-bwaplatINDELD6_15**
86.9684
78.1121
98.0899
65.2244
20381571120387397273
68.7657
gduggal-bwaplatINDELD6_15*het
87.6003
79.2874
97.8603
73.1960
91912401919320185
42.2886
gduggal-bwaplatINDELD6_15*hetalt
82.8017
71.8008
97.7833
50.4460
586923055867133131
98.4962
gduggal-bwaplatINDELD6_15*homalt
90.8801
84.1132
98.8312
57.2595
5321100553276357
90.4762
gduggal-bwaplatINDELI16_PLUS**
72.4372
57.6760
97.3531
65.4535
36782699367810083
83.0000
gduggal-bwaplatINDELI16_PLUS*het
55.5939
38.8521
97.6895
77.4865
1056166210572513
52.0000
gduggal-bwaplatINDELI16_PLUS*hetalt
78.3575
65.0620
98.4827
54.0810
136573313632119
90.4762
gduggal-bwaplatINDELI16_PLUS*homalt
87.5361
80.5253
95.8841
57.8947
125730412585451
94.4444
gduggal-bwaplatINDELI1_5**
93.7478
88.8514
99.2155
64.5183
133867167971337981058675
63.7996
gduggal-bwaplatINDELI1_5*het
93.5751
88.7894
98.9060
66.7915
70180886170159776424
54.6392
gduggal-bwaplatINDELI1_5*hetalt
82.6726
71.4515
98.0748
76.8337
799931967998157152
96.8153
gduggal-bwaplatINDELI1_5*homalt
95.8146
92.1560
99.7758
57.5165
5568847405564112599
79.2000
gduggal-bwaplatINDELI6_15**
86.3949
77.4322
97.7041
60.0483
19221560219235452296
65.4867
gduggal-bwaplatINDELI6_15*het
84.1633
73.9659
97.6222
67.9845
74212612743118155
30.3867
gduggal-bwaplatINDELI6_15*hetalt
85.2525
75.5818
97.7610
47.7759
646320886462148138
93.2432
gduggal-bwaplatINDELI6_15*homalt
91.2395
85.5426
97.7493
57.4509
53379025342123103
83.7398
gduggal-bwaplatSNP***
98.8646
98.0471
99.6958
26.6546
299496559654299552391391314
14.3779
gduggal-bwaplatSNP**het
98.8209
98.1336
99.5179
30.8495
183861934968183950089121113
12.4888
gduggal-bwaplatSNP**hetalt
95.9084
92.8817
99.1390
56.6631
8096280677
100.0000
gduggal-bwaplatSNP**homalt
98.9364
97.9135
99.9810
18.7279
1155537246241155217220194
88.1818
gduggal-bwaplatSNPti**
99.0047
98.3196
99.6994
24.2468
20504673504420508046183880
14.2326
gduggal-bwaplatSNPti*het
98.9567
98.3966
99.5232
28.0886
12613372055412619236046762
12.6034
gduggal-bwaplatSNPti*hetalt
95.4648
92.2680
98.8909
56.0163
5374553566
100.0000
gduggal-bwaplatSNPti*homalt
99.0843
98.2012
99.9834
17.0820
78859314445788346131112
85.4962
gduggal-bwaplatSNPtv**
98.5599
97.4574
99.6876
31.4101
945035246559452542962440
14.8548
gduggal-bwaplatSNPtv*het
98.5255
97.5640
99.5062
36.2003
577282144145775772866351
12.2470
gduggal-bwaplatSNPtv*hetalt
95.9084
92.8817
99.1390
56.6631
8096280677
100.0000
gduggal-bwaplatSNPtv*homalt
98.6202
97.3009
99.9757
22.0523
366944101793668718982
92.1348
gduggal-bwavardINDEL***
87.3464
87.1769
87.5166
58.1126
300361441812993414269838856
91.0019
gduggal-bwavardINDEL**het
89.1538
98.0771
81.7188
63.1804
19040037331901274253338764
91.1386
gduggal-bwavardINDEL**hetalt
0.0000
0.4042
0.0000
0.0000
10225135000
gduggal-bwavardINDEL**homalt
93.4187
87.7664
99.8491
40.7725
1098591531310921416592
55.7576
gduggal-bwavardINDELC16_PLUS**
0.0000
0.0000
32.7485
94.0314
005611511
9.5652
gduggal-bwavardINDELC16_PLUS*het
0.0000
0.0000
27.5862
93.9734
00401058
7.6191
gduggal-bwavardINDELC16_PLUS*hetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardINDELC16_PLUS*homalt
0.0000
0.0000
61.5385
94.3355
0016103
30.0000
gduggal-bwavardINDELC1_5**
78.1282
80.0000
76.3420
92.2396
821607498106
21.2851
gduggal-bwavardINDELC1_5*het
77.2653
88.8889
68.3301
92.9553
811068495105
21.2121
gduggal-bwavardINDELC1_5*hetalt
0.0000
0.0000
0.0000
01000
gduggal-bwavardINDELC1_5*homalt
0.0000
0.0000
99.4465
89.0239
0053931
33.3333
gduggal-bwavardINDELC6_15**
79.7527
100.0000
66.3239
94.4109
7025813132
24.4275
gduggal-bwavardINDELC6_15*het
73.0769
100.0000
57.5758
94.9772
7017112630
23.8095
gduggal-bwavardINDELC6_15*hetalt
0.0000
0.0000
0.0000
00000
gduggal-bwavardINDELC6_15*homalt
0.0000
0.0000
94.5652
91.2130
008752
40.0000
gduggal-bwavardINDELD16_PLUS**
63.4968
61.3502
65.7990
69.3353
41622622417121681906
87.9151
gduggal-bwavardINDELD16_PLUS*het
72.3037
95.0301
58.3494
71.4553
3002157302621601899
87.9167
gduggal-bwavardINDELD16_PLUS*hetalt
0.0000
0.3104
0.0000
0.0000
61927000
gduggal-bwavardINDELD16_PLUS*homalt
80.8672
68.2033
99.3062
53.9537
1154538114587
87.5000