PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79851-79900 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I16_PLUS | map_siren | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.9558 | 16 | 0 | 17 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_siren | homalt | 97.5610 | 95.2381 | 100.0000 | 95.6236 | 20 | 1 | 20 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_siren | * | 98.1530 | 99.2066 | 97.1215 | 84.5697 | 3501 | 28 | 3509 | 104 | 9 | 8.6539 | |
| ckim-gatk | INDEL | D1_5 | map_siren | het | 97.6349 | 99.5169 | 95.8228 | 85.4351 | 2266 | 11 | 2271 | 99 | 5 | 5.0505 | |
| ckim-gatk | INDEL | D1_5 | map_siren | hetalt | 93.6709 | 88.0952 | 100.0000 | 91.2218 | 74 | 10 | 74 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_siren | homalt | 99.4864 | 99.4007 | 99.5723 | 81.4444 | 1161 | 7 | 1164 | 5 | 4 | 80.0000 | |
| jlack-gatk | INDEL | * | map_siren | * | 96.8350 | 98.5155 | 95.2108 | 84.4494 | 7300 | 110 | 7316 | 368 | 36 | 9.7826 | |
| jlack-gatk | INDEL | * | map_siren | het | 95.6389 | 98.6025 | 92.8482 | 85.9136 | 4445 | 63 | 4453 | 343 | 22 | 6.4140 | |
| jlack-gatk | INDEL | * | map_siren | hetalt | 95.3604 | 91.4980 | 99.5633 | 86.9812 | 226 | 21 | 228 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_siren | homalt | 99.0590 | 99.0207 | 99.0974 | 80.4586 | 2629 | 26 | 2635 | 24 | 14 | 58.3333 | |
| hfeng-pmm3 | SNP | tv | map_siren | * | 99.7604 | 99.7104 | 99.8104 | 56.7354 | 45797 | 133 | 45789 | 87 | 15 | 17.2414 | |
| hfeng-pmm3 | SNP | tv | map_siren | het | 99.6834 | 99.6155 | 99.7514 | 57.1444 | 28499 | 110 | 28494 | 71 | 7 | 9.8592 | |
| hfeng-pmm3 | SNP | tv | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.0779 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_siren | homalt | 99.8898 | 99.8724 | 99.9071 | 55.8869 | 17218 | 22 | 17215 | 16 | 8 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | * | 89.0690 | 91.6084 | 86.6667 | 94.5750 | 131 | 12 | 130 | 20 | 3 | 15.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | het | 87.6125 | 93.5897 | 82.3529 | 95.8313 | 73 | 5 | 70 | 15 | 2 | 13.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | hetalt | 89.7657 | 83.8710 | 96.5517 | 80.4054 | 26 | 5 | 28 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | homalt | 91.4286 | 94.1176 | 88.8889 | 93.7716 | 32 | 2 | 32 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D1_5 | map_siren | * | 96.8891 | 99.0932 | 94.7810 | 83.4660 | 3497 | 32 | 3505 | 193 | 13 | 6.7358 | |
| jlack-gatk | INDEL | D1_5 | map_siren | het | 95.7195 | 99.4730 | 92.2389 | 84.5589 | 2265 | 12 | 2270 | 191 | 11 | 5.7592 | |
| jlack-gatk | INDEL | D1_5 | map_siren | hetalt | 95.0000 | 90.4762 | 100.0000 | 90.7543 | 76 | 8 | 76 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_siren | homalt | 99.3983 | 98.9726 | 99.8277 | 79.2900 | 1156 | 12 | 1159 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | * | map_siren | * | 99.7673 | 99.6957 | 99.8390 | 54.1028 | 145783 | 445 | 145760 | 235 | 40 | 17.0213 | |
| hfeng-pmm3 | SNP | * | map_siren | het | 99.6837 | 99.5824 | 99.7852 | 54.5786 | 90611 | 380 | 90597 | 195 | 18 | 9.2308 | |
| hfeng-pmm3 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.0779 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_siren | homalt | 99.9057 | 99.8840 | 99.9274 | 53.2388 | 55092 | 64 | 55083 | 40 | 22 | 55.0000 | |
| hfeng-pmm3 | SNP | ti | map_siren | * | 99.7701 | 99.6881 | 99.8523 | 52.8057 | 100042 | 313 | 100027 | 148 | 25 | 16.8919 | |
| hfeng-pmm3 | SNP | ti | map_siren | het | 99.6838 | 99.5672 | 99.8007 | 53.2950 | 62112 | 270 | 62103 | 124 | 11 | 8.8710 | |
| hfeng-pmm3 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 72.8155 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_siren | homalt | 99.9129 | 99.8892 | 99.9367 | 51.9265 | 37874 | 42 | 37868 | 24 | 14 | 58.3333 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | * | 96.6443 | 94.4262 | 98.9691 | 82.7607 | 288 | 17 | 288 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 83.7181 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.1925 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 83.4254 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | * | 99.3769 | 99.3199 | 99.4339 | 78.1455 | 3505 | 24 | 3513 | 20 | 5 | 25.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | het | 99.3647 | 99.4730 | 99.2567 | 77.5211 | 2265 | 12 | 2270 | 17 | 2 | 11.7647 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | hetalt | 95.6522 | 91.6667 | 100.0000 | 89.9478 | 77 | 7 | 77 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_siren | homalt | 99.6576 | 99.5719 | 99.7434 | 77.6311 | 1163 | 5 | 1166 | 3 | 3 | 100.0000 | |