PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79751-79800 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | map_siren | * | 85.3582 | 75.5331 | 98.1215 | 78.4772 | 5597 | 1813 | 5589 | 107 | 46 | 42.9907 | |
| ckim-isaac | INDEL | * | map_siren | het | 87.7323 | 79.7249 | 97.5278 | 80.3155 | 3594 | 914 | 3590 | 91 | 35 | 38.4615 | |
| ckim-isaac | INDEL | * | map_siren | hetalt | 73.9743 | 59.9190 | 96.6443 | 83.7336 | 148 | 99 | 144 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | * | map_siren | homalt | 82.0615 | 69.8682 | 99.4105 | 72.7551 | 1855 | 800 | 1855 | 11 | 7 | 63.6364 | |
| ckim-dragen | INDEL | C1_5 | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D1_5 | map_siren | * | 98.3320 | 98.6115 | 98.0541 | 82.6974 | 3480 | 49 | 3477 | 69 | 7 | 10.1449 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| ckim-dragen | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 89.8570 | 78 | 6 | 78 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_siren | homalt | 99.2693 | 98.8870 | 99.6546 | 81.5458 | 1155 | 13 | 1154 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | * | 97.6267 | 97.0530 | 98.2072 | 86.4726 | 494 | 15 | 493 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | D6_15 | map_siren | het | 97.8533 | 97.8571 | 97.8495 | 88.2378 | 274 | 6 | 273 | 6 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 74.0223 | 93 | 6 | 93 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_siren | homalt | 97.6923 | 97.6923 | 97.6923 | 86.7482 | 127 | 3 | 127 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | * | 96.0323 | 97.6744 | 94.4444 | 91.6589 | 84 | 2 | 85 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 91.9255 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 86.9919 | 15 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.9487 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_siren | * | 98.1515 | 98.0699 | 98.2333 | 81.2007 | 2947 | 58 | 2947 | 53 | 13 | 24.5283 | |
| ckim-dragen | INDEL | I1_5 | map_siren | het | 97.4161 | 97.5610 | 97.2716 | 82.6203 | 1640 | 41 | 1640 | 46 | 8 | 17.3913 | |
| ckim-dragen | INDEL | I1_5 | map_siren | hetalt | 97.2477 | 94.6429 | 100.0000 | 86.4277 | 106 | 6 | 106 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_siren | homalt | 99.2562 | 99.0924 | 99.4205 | 77.9401 | 1201 | 11 | 1201 | 7 | 5 | 71.4286 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | * | 87.4390 | 93.0070 | 82.5000 | 95.1981 | 133 | 10 | 132 | 28 | 3 | 10.7143 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | het | 85.1126 | 94.8718 | 77.1739 | 96.1842 | 74 | 4 | 71 | 21 | 1 | 4.7619 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 82.6087 | 26 | 5 | 28 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_siren | homalt | 89.1892 | 97.0588 | 82.5000 | 94.7368 | 33 | 1 | 33 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_siren | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I6_15 | map_siren | * | 96.0396 | 95.4098 | 96.6777 | 83.6945 | 291 | 14 | 291 | 10 | 4 | 40.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | het | 96.0059 | 95.8042 | 96.2085 | 84.5308 | 137 | 6 | 203 | 8 | 2 | 25.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 66 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 81.3278 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | * | map_siren | * | 98.2653 | 98.4743 | 98.0572 | 58.9696 | 143997 | 2231 | 143999 | 2853 | 550 | 19.2780 | |
| cchapple-custom | SNP | * | map_siren | het | 97.7546 | 98.5944 | 96.9290 | 63.2688 | 89712 | 1279 | 89826 | 2846 | 543 | 19.0794 | |
| cchapple-custom | SNP | * | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_siren | homalt | 99.1241 | 98.2758 | 99.9871 | 48.6990 | 54205 | 951 | 54173 | 7 | 7 | 100.0000 | |