PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79701-79750 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | map_siren | * | 87.3579 | 85.7022 | 89.0790 | 62.2878 | 39363 | 6567 | 39315 | 4820 | 974 | 20.2075 | |
| ciseli-custom | SNP | tv | map_siren | het | 84.4100 | 82.1595 | 86.7874 | 65.3031 | 23505 | 5104 | 23489 | 3576 | 93 | 2.6007 | |
| ciseli-custom | SNP | tv | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | tv | map_siren | homalt | 92.1923 | 91.6589 | 92.7320 | 56.2107 | 15802 | 1438 | 15770 | 1236 | 874 | 70.7120 | |
| ciseli-custom | SNP | * | map_siren | * | 89.7321 | 87.9989 | 91.5349 | 59.0239 | 128679 | 17549 | 128115 | 11848 | 2967 | 25.0422 | |
| ciseli-custom | SNP | * | map_siren | het | 87.4519 | 84.7172 | 90.3691 | 62.2108 | 77085 | 13906 | 76849 | 8190 | 211 | 2.5763 | |
| ciseli-custom | SNP | * | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | * | map_siren | homalt | 93.3935 | 93.4404 | 93.3467 | 52.8475 | 51538 | 3618 | 51210 | 3650 | 2749 | 75.3151 | |
| ciseli-custom | INDEL | I6_15 | map_siren | * | 31.6781 | 21.6393 | 59.0909 | 84.5070 | 66 | 239 | 65 | 45 | 41 | 91.1111 | |
| ciseli-custom | INDEL | I6_15 | map_siren | het | 39.1268 | 27.9720 | 65.0794 | 86.1842 | 40 | 103 | 41 | 22 | 21 | 95.4545 | |
| ciseli-custom | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | map_siren | homalt | 35.9820 | 27.7778 | 51.0638 | 81.4961 | 25 | 65 | 24 | 23 | 20 | 86.9565 | |
| ciseli-custom | INDEL | D6_15 | map_siren | * | 62.3762 | 61.8861 | 62.8743 | 84.5131 | 315 | 194 | 315 | 186 | 97 | 52.1505 | |
| ciseli-custom | INDEL | D6_15 | map_siren | het | 69.4186 | 71.7857 | 67.2026 | 85.2327 | 201 | 79 | 209 | 102 | 21 | 20.5882 | |
| ciseli-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 7.0707 | 0.0000 | 0.0000 | 7 | 92 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_siren | homalt | 66.5025 | 82.3077 | 55.7895 | 83.1709 | 107 | 23 | 106 | 84 | 76 | 90.4762 | |
| ciseli-custom | INDEL | I1_5 | map_siren | * | 68.4975 | 64.7920 | 72.6525 | 80.4862 | 1947 | 1058 | 1942 | 731 | 614 | 83.9945 | |
| ciseli-custom | INDEL | I1_5 | map_siren | het | 73.5105 | 78.9411 | 68.7790 | 81.4258 | 1327 | 354 | 1335 | 606 | 517 | 85.3135 | |
| ciseli-custom | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 7.1429 | 0.0000 | 0.0000 | 8 | 104 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_siren | homalt | 62.7683 | 50.4950 | 82.9235 | 77.4631 | 612 | 600 | 607 | 125 | 97 | 77.6000 | |
| ckim-dragen | INDEL | * | map_siren | * | 97.9669 | 98.2321 | 97.7032 | 83.7470 | 7279 | 131 | 7274 | 171 | 29 | 16.9591 | |
| ckim-dragen | INDEL | * | map_siren | het | 97.4637 | 98.1145 | 96.8216 | 84.6377 | 4423 | 85 | 4417 | 145 | 14 | 9.6552 | |
| ckim-dragen | INDEL | * | map_siren | hetalt | 96.2185 | 92.7126 | 100.0000 | 86.2007 | 229 | 18 | 231 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_siren | homalt | 98.9825 | 98.9454 | 99.0196 | 81.6305 | 2627 | 28 | 2626 | 26 | 15 | 57.6923 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | * | 11.6505 | 6.9767 | 35.2941 | 93.5115 | 6 | 80 | 6 | 11 | 4 | 36.3636 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | het | 10.7143 | 6.1224 | 42.8571 | 96.1957 | 3 | 46 | 3 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_siren | homalt | 19.3548 | 14.2857 | 30.0000 | 87.1795 | 3 | 18 | 3 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | * | 32.6087 | 20.9790 | 73.1707 | 91.1638 | 30 | 113 | 30 | 11 | 6 | 54.5455 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | het | 29.1262 | 19.2308 | 60.0000 | 92.2840 | 15 | 63 | 15 | 10 | 5 | 50.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 87.6404 | 11 | 20 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_siren | homalt | 20.5128 | 11.7647 | 80.0000 | 90.1961 | 4 | 30 | 4 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_siren | * | 88.4097 | 80.1927 | 98.5028 | 77.5975 | 2830 | 699 | 2829 | 43 | 19 | 44.1860 | |
| ckim-isaac | INDEL | D1_5 | map_siren | het | 90.2008 | 83.4870 | 98.0888 | 79.1671 | 1901 | 376 | 1899 | 37 | 14 | 37.8378 | |
| ckim-isaac | INDEL | D1_5 | map_siren | hetalt | 78.6581 | 67.8571 | 93.5484 | 87.0293 | 57 | 27 | 58 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_siren | homalt | 85.4065 | 74.6575 | 99.7712 | 71.3349 | 872 | 296 | 872 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | * | 68.4305 | 53.2417 | 95.7447 | 78.2743 | 271 | 238 | 270 | 12 | 10 | 83.3333 | |
| ckim-isaac | INDEL | D6_15 | map_siren | het | 69.0327 | 54.6429 | 93.7107 | 81.3380 | 153 | 127 | 149 | 10 | 8 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | hetalt | 74.2364 | 59.5960 | 98.4127 | 73.9669 | 59 | 40 | 62 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | homalt | 62.1053 | 45.3846 | 98.3333 | 70.5882 | 59 | 71 | 59 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | SNP | tv | map_siren | * | 92.9580 | 88.1058 | 98.3758 | 71.0821 | 40467 | 5463 | 40459 | 668 | 31 | 4.6407 | |
| ckim-gatk | SNP | tv | map_siren | het | 95.0179 | 92.6002 | 97.5652 | 74.8662 | 26492 | 2117 | 26487 | 661 | 26 | 3.9334 | |
| ckim-gatk | SNP | tv | map_siren | hetalt | 87.2483 | 80.2469 | 95.5882 | 82.7848 | 65 | 16 | 65 | 3 | 2 | 66.6667 | |
| ckim-gatk | SNP | tv | map_siren | homalt | 89.2983 | 80.6845 | 99.9712 | 58.8566 | 13910 | 3330 | 13907 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||