PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79401-79450 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D16_PLUS | map_siren | * | 93.8073 | 95.8042 | 91.8919 | 95.1823 | 137 | 6 | 136 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | het | 92.4513 | 97.4359 | 87.9518 | 96.3127 | 76 | 2 | 73 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | hetalt | 94.9153 | 90.3226 | 100.0000 | 80.7692 | 28 | 3 | 30 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_siren | homalt | 95.6522 | 97.0588 | 94.2857 | 94.7368 | 33 | 1 | 33 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_siren | * | 98.3083 | 97.9031 | 98.7169 | 84.9543 | 3455 | 74 | 3462 | 45 | 6 | 13.3333 | |
| ckim-vqsr | INDEL | D1_5 | map_siren | het | 97.8636 | 97.4967 | 98.2332 | 85.9953 | 2220 | 57 | 2224 | 40 | 2 | 5.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_siren | hetalt | 93.6709 | 88.0952 | 100.0000 | 91.2218 | 74 | 10 | 74 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_siren | homalt | 99.4864 | 99.4007 | 99.5723 | 81.4444 | 1161 | 7 | 1164 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | ti | map_siren | * | 99.3101 | 99.3981 | 99.2222 | 57.2359 | 99751 | 604 | 99755 | 782 | 145 | 18.5422 | |
| gduggal-bwafb | SNP | ti | map_siren | het | 99.0568 | 99.3219 | 98.7930 | 59.4400 | 61959 | 423 | 61963 | 757 | 131 | 17.3052 | |
| gduggal-bwafb | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 70.8333 | 56 | 1 | 56 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_siren | homalt | 99.7291 | 99.5253 | 99.9338 | 52.9575 | 37736 | 180 | 37736 | 25 | 14 | 56.0000 | |
| gduggal-bwafb | SNP | * | map_siren | * | 99.2387 | 99.3893 | 99.0885 | 58.6242 | 145335 | 893 | 145339 | 1337 | 225 | 16.8287 | |
| gduggal-bwafb | SNP | * | map_siren | het | 98.9549 | 99.3230 | 98.5895 | 60.8677 | 90375 | 616 | 90379 | 1293 | 200 | 15.4679 | |
| gduggal-bwafb | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_siren | homalt | 99.7102 | 99.5014 | 99.9199 | 54.2074 | 54881 | 275 | 54881 | 44 | 25 | 56.8182 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | * | 89.4095 | 81.6393 | 98.8142 | 76.5306 | 249 | 56 | 250 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | het | 85.3548 | 74.8252 | 99.3333 | 74.6193 | 107 | 36 | 149 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | hetalt | 87.5000 | 77.7778 | 100.0000 | 84.0000 | 56 | 16 | 16 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_siren | homalt | 96.6164 | 95.5556 | 97.7011 | 77.5194 | 86 | 4 | 85 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | * | 77.2358 | 66.4336 | 92.2330 | 84.8529 | 95 | 48 | 95 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | het | 83.1234 | 76.9231 | 90.4110 | 81.1370 | 60 | 18 | 66 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 73.6842 | 11 | 20 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | homalt | 81.3559 | 70.5882 | 96.0000 | 90.8759 | 24 | 10 | 24 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | * | 54.1375 | 38.3721 | 91.8919 | 72.3881 | 33 | 53 | 34 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | het | 46.8750 | 30.6122 | 100.0000 | 69.8630 | 15 | 34 | 22 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | hetalt | 46.6667 | 43.7500 | 50.0000 | 77.7778 | 7 | 9 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | homalt | 64.7059 | 52.3810 | 84.6154 | 75.0000 | 11 | 10 | 11 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | * | 97.6773 | 96.5391 | 98.8428 | 79.9276 | 2901 | 104 | 2904 | 34 | 18 | 52.9412 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | het | 97.2030 | 95.6573 | 98.7995 | 79.6283 | 1608 | 73 | 1646 | 20 | 10 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | hetalt | 90.7317 | 83.0357 | 100.0000 | 92.3729 | 93 | 19 | 54 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_siren | homalt | 98.9302 | 99.0099 | 98.8506 | 78.8211 | 1200 | 12 | 1204 | 14 | 8 | 57.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | * | 98.1690 | 98.0164 | 98.3220 | 81.5743 | 3459 | 70 | 3457 | 59 | 15 | 25.4237 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | het | 98.2729 | 98.2872 | 98.2586 | 80.4710 | 2238 | 39 | 2257 | 40 | 2 | 5.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | hetalt | 84.8684 | 75.0000 | 97.7273 | 92.9487 | 63 | 21 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | homalt | 98.8048 | 99.1438 | 98.4681 | 82.4522 | 1158 | 10 | 1157 | 18 | 12 | 66.6667 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | * | 92.5116 | 88.2122 | 97.2516 | 82.2846 | 449 | 60 | 460 | 13 | 5 | 38.4615 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | het | 93.8000 | 90.3571 | 97.5155 | 79.0228 | 253 | 27 | 314 | 8 | 1 | 12.5000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | hetalt | 77.9122 | 68.6869 | 90.0000 | 81.9820 | 68 | 31 | 18 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | homalt | 98.0843 | 98.4615 | 97.7099 | 87.2070 | 128 | 2 | 128 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | * | 77.9593 | 69.5082 | 88.7500 | 73.3555 | 212 | 93 | 284 | 36 | 33 | 91.6667 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | het | 82.9333 | 77.6224 | 89.0244 | 72.7121 | 111 | 32 | 146 | 18 | 16 | 88.8889 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | hetalt | 46.8085 | 30.5556 | 100.0000 | 73.7226 | 22 | 50 | 36 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_siren | homalt | 86.3666 | 87.7778 | 85.0000 | 74.0821 | 79 | 11 | 102 | 18 | 17 | 94.4444 | |
| eyeh-varpipe | SNP | tv | map_siren | * | 97.2803 | 99.8215 | 94.8652 | 61.8425 | 45848 | 82 | 45301 | 2452 | 30 | 1.2235 | |
| eyeh-varpipe | SNP | tv | map_siren | het | 95.7583 | 99.7903 | 92.0396 | 63.5402 | 28549 | 60 | 28096 | 2430 | 18 | 0.7407 | |