PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79151-79200 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | map_siren | hetalt | 88.6792 | 82.4561 | 95.9184 | 81.0078 | 47 | 10 | 47 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_siren | homalt | 91.9235 | 85.0855 | 99.9566 | 52.7056 | 32261 | 5655 | 32255 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | * | 98.3096 | 98.5358 | 98.0845 | 83.5542 | 2961 | 44 | 2970 | 58 | 9 | 15.5172 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | het | 97.6442 | 98.3938 | 96.9060 | 85.7250 | 1654 | 27 | 1660 | 53 | 5 | 9.4340 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_siren | homalt | 99.5051 | 99.4224 | 99.5878 | 78.4891 | 1205 | 7 | 1208 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | * | 92.7526 | 94.4056 | 91.1565 | 94.8923 | 135 | 8 | 134 | 13 | 2 | 15.3846 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | het | 92.3788 | 96.1538 | 88.8889 | 96.1410 | 75 | 3 | 72 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 81.6456 | 27 | 4 | 29 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | homalt | 92.9577 | 97.0588 | 89.1892 | 94.0419 | 33 | 1 | 33 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.9961 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.8177 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 85.5856 | 15 | 1 | 16 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | homalt | 93.0233 | 95.2381 | 90.9091 | 95.1111 | 20 | 1 | 20 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 92.5000 | 96.8203 | 0 | 0 | 37 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 90.9091 | 96.6206 | 0 | 0 | 20 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 85.7143 | 97.2973 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8391 | 0 | 0 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_siren | * | 99.4858 | 99.2395 | 99.7333 | 50.0979 | 145115 | 1112 | 145108 | 388 | 49 | 12.6289 | |
| ltrigg-rtg1 | SNP | * | map_siren | het | 99.2561 | 98.9032 | 99.6115 | 48.6936 | 89992 | 998 | 89996 | 351 | 16 | 4.5584 | |
| ltrigg-rtg1 | SNP | * | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_siren | homalt | 99.8648 | 99.7933 | 99.9364 | 52.2080 | 55042 | 114 | 55031 | 35 | 31 | 88.5714 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | * | 93.7214 | 88.8112 | 99.2063 | 83.9490 | 127 | 16 | 125 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | het | 96.7234 | 94.8718 | 98.6486 | 85.2883 | 74 | 4 | 73 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | hetalt | 89.2857 | 80.6452 | 100.0000 | 80.8000 | 25 | 6 | 24 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | homalt | 90.3226 | 82.3529 | 100.0000 | 82.1656 | 28 | 6 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_siren | * | 98.2573 | 97.5304 | 98.9952 | 77.5300 | 7227 | 183 | 7192 | 73 | 11 | 15.0685 | |
| ltrigg-rtg2 | INDEL | * | map_siren | het | 98.0316 | 97.4490 | 98.6212 | 76.8583 | 4393 | 115 | 4363 | 61 | 2 | 3.2787 | |
| ltrigg-rtg2 | INDEL | * | map_siren | hetalt | 94.4986 | 90.2834 | 99.1266 | 91.2895 | 223 | 24 | 227 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | homalt | 98.9758 | 98.3427 | 99.6172 | 74.6678 | 2611 | 44 | 2602 | 10 | 7 | 70.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 98.4375 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | ti | map_siren | * | 99.5060 | 99.2556 | 99.7576 | 49.1435 | 99607 | 747 | 99601 | 242 | 38 | 15.7025 | |
| ltrigg-rtg1 | SNP | ti | map_siren | het | 99.2961 | 98.9388 | 99.6561 | 47.8678 | 61719 | 662 | 61718 | 213 | 10 | 4.6948 | |
| ltrigg-rtg1 | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 66.2857 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_siren | homalt | 99.8522 | 99.7758 | 99.9287 | 51.0640 | 37831 | 85 | 37826 | 27 | 26 | 96.2963 | |
| ltrigg-rtg1 | SNP | tv | map_siren | * | 99.4402 | 99.2053 | 99.6762 | 52.0914 | 45565 | 365 | 45564 | 148 | 13 | 8.7838 | |
| ltrigg-rtg1 | SNP | tv | map_siren | het | 99.1688 | 98.8255 | 99.5144 | 50.4058 | 28273 | 336 | 28278 | 138 | 6 | 4.3478 | |
| ltrigg-rtg1 | SNP | tv | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_siren | homalt | 99.8926 | 99.8318 | 99.9535 | 54.5447 | 17211 | 29 | 17205 | 8 | 5 | 62.5000 | |
| ltrigg-rtg2 | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 100.0000 | 99.5305 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.4127 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | * | 64.7096 | 56.6434 | 75.4545 | 82.7316 | 81 | 62 | 83 | 27 | 22 | 81.4815 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | het | 77.8836 | 75.6410 | 80.2632 | 78.7709 | 59 | 19 | 61 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | hetalt | 22.2222 | 12.9032 | 80.0000 | 93.5897 | 4 | 27 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | homalt | 57.1429 | 52.9412 | 62.0690 | 85.5721 | 18 | 16 | 18 | 11 | 6 | 54.5455 | |