PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79051-79100 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | hetalt | 94.1176 | 88.8889 | 100.0000 | 80.5970 | 64 | 8 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | homalt | 96.6288 | 96.6667 | 96.5909 | 78.8969 | 87 | 3 | 85 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | * | 98.4561 | 97.7047 | 99.2192 | 76.7013 | 3448 | 81 | 3431 | 27 | 5 | 18.5185 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | het | 97.9324 | 96.8819 | 99.0059 | 74.1048 | 2206 | 71 | 2191 | 22 | 1 | 4.5455 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | hetalt | 95.1069 | 92.8571 | 97.4684 | 93.1245 | 78 | 6 | 77 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | homalt | 99.7001 | 99.6575 | 99.7427 | 77.3460 | 1164 | 4 | 1163 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 100.0000 | 99.5516 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | map_siren | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.5075 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | * | 92.1763 | 86.7133 | 98.3740 | 86.2876 | 124 | 19 | 121 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | het | 93.2340 | 88.4615 | 98.5507 | 87.7876 | 69 | 9 | 68 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 82.6087 | 26 | 5 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | homalt | 90.6250 | 85.2941 | 96.6667 | 84.5361 | 29 | 5 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | * | 98.3998 | 97.4709 | 99.3466 | 77.4486 | 2929 | 76 | 2889 | 19 | 3 | 15.7895 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | het | 97.6073 | 96.1333 | 99.1272 | 75.0467 | 1616 | 65 | 1590 | 14 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | hetalt | 97.2768 | 95.5357 | 99.0826 | 91.7674 | 107 | 5 | 108 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | homalt | 99.5850 | 99.5050 | 99.6653 | 76.7645 | 1206 | 6 | 1191 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | SNP | * | map_siren | * | 99.4570 | 99.1479 | 99.7681 | 47.8411 | 144981 | 1246 | 144975 | 337 | 38 | 11.2760 | |
| ltrigg-rtg2 | SNP | * | map_siren | het | 99.2163 | 98.7812 | 99.6552 | 46.0328 | 89881 | 1109 | 89887 | 311 | 15 | 4.8232 | |
| ltrigg-rtg2 | SNP | * | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.4897 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_siren | homalt | 99.8557 | 99.7571 | 99.9546 | 50.5157 | 55022 | 134 | 55010 | 25 | 22 | 88.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | * | 81.8182 | 73.2558 | 92.6471 | 71.7842 | 63 | 23 | 63 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | het | 86.6667 | 79.5918 | 95.1220 | 66.6667 | 39 | 10 | 39 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 83.3333 | 10 | 6 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 70.6897 | 14 | 7 | 14 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | * | 98.6051 | 98.0033 | 99.2142 | 76.9745 | 2945 | 60 | 2904 | 23 | 1 | 4.3478 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | het | 97.9207 | 97.1446 | 98.7093 | 76.2482 | 1633 | 48 | 1606 | 21 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 92.1300 | 108 | 4 | 109 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | homalt | 99.5854 | 99.3399 | 99.8321 | 73.3974 | 1204 | 8 | 1189 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_siren | * | 98.7460 | 98.3565 | 99.1387 | 75.8494 | 3471 | 58 | 3453 | 30 | 4 | 13.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_siren | het | 98.6092 | 98.3751 | 98.8444 | 74.6336 | 2240 | 37 | 2224 | 26 | 1 | 3.8462 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_siren | hetalt | 95.1069 | 92.8571 | 97.4684 | 93.2536 | 78 | 6 | 77 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_siren | homalt | 99.2681 | 98.7158 | 99.8267 | 73.6590 | 1153 | 15 | 1152 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | * | 96.2876 | 93.7705 | 98.9437 | 78.2708 | 286 | 19 | 281 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | het | 96.3922 | 93.7063 | 99.2366 | 78.1667 | 134 | 9 | 130 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | hetalt | 94.8905 | 90.2778 | 100.0000 | 81.4085 | 65 | 7 | 66 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | homalt | 97.1812 | 96.6667 | 97.7011 | 75.2841 | 87 | 3 | 85 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | * | 97.4111 | 96.4637 | 98.3773 | 78.8139 | 491 | 18 | 485 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | het | 97.4910 | 97.5000 | 97.4820 | 79.8988 | 273 | 7 | 271 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 80.5139 | 93 | 6 | 91 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | homalt | 97.6500 | 96.1538 | 99.1935 | 74.0042 | 125 | 5 | 123 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_siren | * | 99.4071 | 99.1030 | 99.7130 | 49.8109 | 45518 | 412 | 45517 | 131 | 9 | 6.8702 | |
| ltrigg-rtg2 | SNP | tv | map_siren | het | 99.1276 | 98.6962 | 99.5628 | 47.7162 | 28236 | 373 | 28241 | 124 | 4 | 3.2258 | |
| ltrigg-rtg2 | SNP | tv | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.4897 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_siren | homalt | 99.8781 | 99.7912 | 99.9651 | 52.8102 | 17204 | 36 | 17198 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | SNP | ti | map_siren | * | 99.4787 | 99.1669 | 99.7924 | 46.9044 | 99518 | 836 | 99513 | 207 | 30 | 14.4928 | |
| ltrigg-rtg2 | SNP | ti | map_siren | het | 99.2569 | 98.8202 | 99.6976 | 45.2238 | 61645 | 736 | 61646 | 187 | 11 | 5.8824 | |
| ltrigg-rtg2 | SNP | ti | map_siren | hetalt | 97.3451 | 96.4912 | 98.2143 | 66.8639 | 55 | 2 | 55 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_siren | homalt | 99.8455 | 99.7415 | 99.9498 | 49.3967 | 37818 | 98 | 37812 | 19 | 18 | 94.7368 | |