PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78851-78900 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.8636 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | homalt | 64.8360 | 47.9684 | 100.0000 | 92.8276 | 850 | 922 | 850 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 98.7207 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 98.8304 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 98.2500 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4424 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3607 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 99.3769 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.9637 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 93.9130 | 94.7368 | 93.1034 | 97.6346 | 108 | 6 | 108 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 91.7293 | 92.4242 | 91.0448 | 98.2502 | 61 | 5 | 61 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4375 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0370 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 93.5065 | 97.2973 | 90.0000 | 97.0803 | 180 | 5 | 180 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 92.0152 | 99.1803 | 85.8156 | 97.4396 | 121 | 1 | 121 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.4444 | 1 | 2 | 1 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.0129 | 58 | 2 | 58 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 97.5798 | 22 | 0 | 22 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.9532 | 14 | 0 | 14 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 2 | 0 | 2 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0784 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 88.8889 | 80.0000 | 100.0000 | 95.2941 | 4 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 96.4286 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | * | 96.1403 | 93.3934 | 99.0536 | 93.2003 | 311 | 22 | 314 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | het | 94.8545 | 91.4692 | 98.5000 | 92.3518 | 193 | 18 | 197 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7923 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 92.8205 | 112 | 4 | 112 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | * | 97.7139 | 95.7932 | 99.7133 | 83.6180 | 7651 | 336 | 7651 | 22 | 11 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | het | 96.6928 | 93.8640 | 99.6973 | 80.4597 | 4941 | 323 | 4941 | 15 | 4 | 26.6667 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | homalt | 99.6317 | 99.5217 | 99.7419 | 87.3537 | 2705 | 13 | 2705 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | * | 97.5651 | 95.5075 | 99.7133 | 82.6147 | 2785 | 131 | 2782 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | het | 96.5098 | 93.5878 | 99.6202 | 78.7624 | 1839 | 126 | 1836 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | homalt | 99.6822 | 99.4715 | 99.8938 | 87.1662 | 941 | 5 | 941 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||