PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78801-78850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | * | 97.3857 | 95.0355 | 99.8552 | 81.2214 | 4824 | 252 | 4827 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | het | 96.1485 | 92.6948 | 99.8695 | 77.1012 | 3058 | 241 | 3061 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 78.5714 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | homalt | 99.6608 | 99.4921 | 99.8301 | 85.6923 | 1763 | 9 | 1763 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 93.6639 | 22 | 0 | 23 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 93.1507 | 14 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | * | 97.1847 | 94.6538 | 99.8547 | 80.7686 | 7560 | 427 | 7560 | 11 | 4 | 36.3636 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | het | 95.8720 | 92.2112 | 99.8355 | 76.2366 | 4854 | 410 | 4854 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | homalt | 99.6681 | 99.4481 | 99.8891 | 85.6712 | 2703 | 15 | 2703 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | * | 95.0781 | 94.9293 | 95.2273 | 91.7069 | 7582 | 405 | 7582 | 380 | 95 | 25.0000 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | het | 93.5587 | 94.0919 | 93.0316 | 92.3350 | 4953 | 311 | 4953 | 371 | 90 | 24.2588 | |
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l250_m2_e1 | homalt | 98.1703 | 96.7255 | 99.6588 | 90.0637 | 2629 | 89 | 2629 | 9 | 5 | 55.5556 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | * | 95.5153 | 95.0355 | 96.0000 | 91.5044 | 4824 | 252 | 4824 | 201 | 59 | 29.3532 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | het | 94.1266 | 94.2407 | 94.0127 | 92.2458 | 3109 | 190 | 3109 | 198 | 56 | 28.2828 | |
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l250_m2_e1 | homalt | 98.2808 | 96.7833 | 99.8254 | 89.5879 | 1715 | 57 | 1715 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | * | 90.5830 | 88.5965 | 92.6606 | 96.5053 | 101 | 13 | 101 | 8 | 4 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | het | 89.3939 | 89.3939 | 89.3939 | 97.3419 | 59 | 7 | 59 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.2390 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.2423 | 94.5816 | 93.9053 | 92.0320 | 2758 | 158 | 2758 | 179 | 36 | 20.1117 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | het | 92.6168 | 93.8422 | 91.4229 | 92.4770 | 1844 | 121 | 1844 | 173 | 34 | 19.6532 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | homalt | 97.9636 | 96.6173 | 99.3478 | 90.8449 | 914 | 32 | 914 | 6 | 2 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | * | 94.8576 | 91.2913 | 98.7138 | 93.7286 | 304 | 29 | 307 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | het | 92.1619 | 86.2559 | 98.9362 | 91.7616 | 182 | 29 | 186 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7277 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | homalt | 99.1453 | 100.0000 | 98.3051 | 94.6942 | 116 | 0 | 116 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 57.1429 | 50.0000 | 66.6667 | 97.0443 | 4 | 4 | 4 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 60.0000 | 60.0000 | 60.0000 | 97.1264 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.5517 | 1 | 2 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | * | 70.7185 | 55.5778 | 97.1973 | 96.3060 | 4439 | 3548 | 4439 | 128 | 10 | 7.8125 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | het | 73.9537 | 60.0874 | 96.1398 | 96.8694 | 3163 | 2101 | 3163 | 127 | 9 | 7.0866 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.3243 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | homalt | 63.8458 | 46.9095 | 99.9216 | 93.0622 | 1275 | 1443 | 1275 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | * | 71.3857 | 56.2254 | 97.7397 | 96.1904 | 2854 | 2222 | 2854 | 66 | 8 | 12.1212 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | het | 74.6274 | 60.7154 | 96.8101 | 96.8027 | 2003 | 1296 | 2003 | 66 | 8 | 12.1212 | |