PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78751-78800 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | * | 95.7746 | 91.8919 | 100.0000 | 92.3627 | 170 | 15 | 171 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | het | 93.4498 | 87.7049 | 100.0000 | 89.6190 | 107 | 15 | 109 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9950 | 3 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9394 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e1 | * | 88.8889 | 80.0000 | 100.0000 | 95.3488 | 4 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.6522 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | * | 94.6067 | 92.1053 | 97.2477 | 94.4160 | 105 | 9 | 106 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | het | 91.9483 | 86.3636 | 98.3051 | 92.7160 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0521 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.8443 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | * | 97.6744 | 95.4545 | 100.0000 | 94.0860 | 21 | 1 | 22 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | het | 96.2963 | 92.8571 | 100.0000 | 92.8571 | 13 | 1 | 14 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5455 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 93.3333 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | * | 96.9359 | 94.0541 | 100.0000 | 91.6547 | 174 | 11 | 175 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | het | 96.6102 | 93.4426 | 100.0000 | 90.3654 | 114 | 8 | 116 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0244 | 3 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.7151 | 57 | 3 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 95.8621 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 95.5882 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 90.6250 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 93.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 87.5000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5035 | 92.9825 | 98.1651 | 93.9646 | 106 | 8 | 107 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | het | 92.9378 | 89.3939 | 96.7742 | 93.3405 | 59 | 7 | 60 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0991 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 98.9011 | 97.8261 | 100.0000 | 93.1087 | 45 | 1 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | * | 96.8015 | 93.9300 | 99.8540 | 79.7875 | 2739 | 177 | 2736 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | het | 95.4049 | 91.3995 | 99.7774 | 74.6007 | 1796 | 169 | 1793 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | homalt | 99.6819 | 99.3658 | 100.0000 | 85.4444 | 940 | 6 | 940 | 0 | 0 | ||