PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78251-78300 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.9532 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.7376 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 100.0000 | 100.0000 | 100.0000 | 96.8794 | 22 | 0 | 22 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 97.1253 | 14 | 0 | 14 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1290 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 83.3333 | 100.0000 | 71.4286 | 97.7707 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 97.8632 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 96.2963 | 98.3784 | 94.3005 | 95.8016 | 182 | 3 | 182 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 94.8617 | 98.3607 | 91.6031 | 96.0122 | 120 | 2 | 120 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.9225 | 59 | 1 | 59 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5752 | 94.7368 | 96.4286 | 96.5770 | 108 | 6 | 108 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 93.7500 | 90.9091 | 96.7742 | 97.1946 | 60 | 6 | 60 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.8718 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | * | 72.7100 | 74.5946 | 70.9184 | 96.2235 | 138 | 47 | 139 | 57 | 24 | 42.1053 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | het | 72.2986 | 81.1475 | 65.1899 | 96.1529 | 99 | 23 | 103 | 55 | 22 | 40.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.4912 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | * | 78.6127 | 77.2727 | 80.0000 | 96.4413 | 17 | 5 | 16 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | het | 77.7385 | 78.5714 | 76.9231 | 97.0455 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2623 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 60.0000 | 75.0000 | 96.6387 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 66.6667 | 66.6667 | 96.3415 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2973 | 1 | 0 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e1 | * | 67.7462 | 69.9700 | 65.6593 | 96.4861 | 233 | 100 | 239 | 125 | 63 | 50.4000 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | het | 65.6155 | 68.2464 | 63.1799 | 96.7945 | 144 | 67 | 151 | 88 | 29 | 32.9545 | |
| anovak-vg | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 2 | 4 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l250_m2_e1 | homalt | 72.6272 | 75.0000 | 70.4000 | 95.6911 | 87 | 29 | 88 | 37 | 34 | 91.8919 | |
| anovak-vg | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 50.0000 | 98.4615 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 50.0000 | 98.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||