PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77201-77250 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 50.0000 | 45.4545 | 55.5556 | 97.9167 | 10 | 12 | 10 | 8 | 2 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 38.4615 | 35.7143 | 41.6667 | 98.0645 | 5 | 9 | 5 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | homalt | 83.3333 | 83.3333 | 83.3333 | 97.5410 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | * | 69.2947 | 64.8053 | 74.4524 | 92.2088 | 5176 | 2811 | 5167 | 1773 | 350 | 19.7406 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | het | 62.8544 | 57.5608 | 69.2202 | 93.5567 | 3030 | 2234 | 3027 | 1346 | 41 | 3.0461 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.9091 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | homalt | 81.0638 | 78.8447 | 83.4114 | 87.8871 | 2143 | 575 | 2137 | 425 | 307 | 72.2353 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | * | 93.8972 | 94.8949 | 92.9204 | 96.3411 | 316 | 17 | 315 | 24 | 6 | 25.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | het | 92.7858 | 94.7867 | 90.8676 | 96.7304 | 200 | 11 | 199 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.2143 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 95.0491 | 112 | 4 | 112 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 46.1538 | 39.4737 | 55.5556 | 97.4782 | 45 | 69 | 45 | 36 | 27 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 54.4118 | 56.0606 | 52.8571 | 97.3987 | 37 | 29 | 37 | 33 | 26 | 78.7879 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 28.0702 | 17.3913 | 72.7273 | 97.8887 | 8 | 38 | 8 | 3 | 1 | 33.3333 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | * | 70.8062 | 67.0213 | 75.0441 | 92.1332 | 3402 | 1674 | 3401 | 1131 | 218 | 19.2750 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | het | 64.3765 | 59.8060 | 69.7034 | 93.5598 | 1973 | 1326 | 1974 | 858 | 20 | 2.3310 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.8710 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | homalt | 82.2049 | 80.4740 | 84.0118 | 87.5404 | 1426 | 346 | 1424 | 271 | 196 | 72.3247 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | * | 66.5781 | 60.9396 | 73.3664 | 92.3960 | 1777 | 1139 | 1774 | 644 | 134 | 20.8075 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | het | 60.2121 | 53.7913 | 68.3733 | 93.6004 | 1057 | 908 | 1055 | 488 | 21 | 4.3033 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.9091 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | homalt | 78.9120 | 75.7928 | 82.2989 | 88.6021 | 717 | 229 | 716 | 154 | 111 | 72.0779 | |
| ckim-isaac | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | SNP | tv | map_l250_m2_e1 | * | 69.6890 | 54.5610 | 96.4242 | 96.4387 | 1591 | 1325 | 1591 | 59 | 1 | 1.6949 | |
| ckim-gatk | SNP | tv | map_l250_m2_e1 | het | 72.9840 | 59.1858 | 95.1718 | 96.8842 | 1163 | 802 | 1163 | 59 | 1 | 1.6949 | |
| ckim-gatk | SNP | tv | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 99.2366 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m2_e1 | homalt | 62.1996 | 45.1374 | 100.0000 | 93.8825 | 427 | 519 | 427 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | * | 64.9819 | 48.6486 | 97.8261 | 97.0101 | 90 | 95 | 90 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | het | 69.4952 | 54.0984 | 97.1429 | 97.2741 | 66 | 56 | 68 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | homalt | 53.6585 | 36.6667 | 100.0000 | 94.4584 | 22 | 38 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | * | 41.3793 | 27.2727 | 85.7143 | 97.7848 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e1 | het | 33.3333 | 21.4286 | 75.0000 | 98.3806 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |