PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77001-77050 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | map_l250_m2_e0 | * | 97.3484 | 97.8435 | 96.8583 | 89.6841 | 4900 | 108 | 4902 | 159 | 19 | 11.9497 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | het | 96.3935 | 97.2956 | 95.5080 | 91.3622 | 3166 | 88 | 3168 | 149 | 10 | 6.7114 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.5660 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l250_m2_e0 | homalt | 99.1399 | 98.8565 | 99.4250 | 83.6036 | 1729 | 20 | 1729 | 10 | 9 | 90.0000 | |
| ckim-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | * | map_l250_m2_e0 | * | 92.5287 | 97.2810 | 88.2192 | 97.2498 | 322 | 9 | 322 | 43 | 4 | 9.3023 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | het | 89.9123 | 97.6190 | 83.3333 | 97.6273 | 205 | 5 | 205 | 41 | 2 | 4.8781 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e0 | homalt | 98.2609 | 98.2609 | 98.2609 | 95.6538 | 113 | 2 | 113 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | * | 96.1788 | 95.9417 | 96.4172 | 90.1898 | 7565 | 320 | 7562 | 281 | 65 | 23.1317 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | het | 95.2059 | 95.7451 | 94.6728 | 91.6166 | 4973 | 221 | 4976 | 280 | 64 | 22.8571 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 5 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l250_m2_e0 | homalt | 98.1039 | 96.3142 | 99.9613 | 85.0046 | 2587 | 99 | 2586 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 95.8333 | 100.0000 | 92.0000 | 95.3532 | 22 | 0 | 23 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 94.4444 | 100.0000 | 89.4737 | 95.6221 | 14 | 0 | 17 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l250_m2_e0 | * | 100.0000 | 100.0000 | 100.0000 | 99.5868 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 99.2857 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 98.0392 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 94.6665 | 97.2826 | 92.1875 | 94.6711 | 179 | 5 | 177 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 93.0049 | 97.5207 | 88.8889 | 94.9457 | 118 | 3 | 120 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 93.8841 | 58 | 2 | 57 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.6027 | 6 | 2 | 6 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 98.0952 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3415 | 3 | 0 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 96.5517 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 80.0000 | 100.0000 | 66.6667 | 96.2025 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 93.6762 | 92.9204 | 94.4444 | 96.0497 | 105 | 8 | 102 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 91.4729 | 89.3939 | 93.6508 | 96.7102 | 59 | 7 | 59 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6539 | 97.7778 | 95.5556 | 94.5055 | 44 | 1 | 43 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | * | 65.2174 | 48.9130 | 97.8261 | 96.9405 | 90 | 94 | 90 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | het | 69.8630 | 54.5455 | 97.1429 | 97.2167 | 66 | 55 | 68 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | homalt | 53.6585 | 36.6667 | 100.0000 | 94.3005 | 22 | 38 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | * | 41.3793 | 27.2727 | 85.7143 | 97.7346 | 6 | 16 | 6 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m2_e0 | het | 33.3333 | 21.4286 | 75.0000 | 98.3607 | 3 | 11 | 3 | 1 | 1 | 100.0000 | |