PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
76751-76800 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.3396 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 96.5517 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 92.8571 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | * | 94.5577 | 92.0354 | 97.2222 | 94.2614 | 104 | 9 | 105 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | het | 91.9483 | 86.3636 | 98.3051 | 92.3575 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0385 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7894 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 95.8042 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 94.4444 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 3 | 0 | 3 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | * | 96.2305 | 97.3642 | 95.1229 | 91.2925 | 4876 | 132 | 4876 | 250 | 52 | 20.8000 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | het | 95.2267 | 97.7873 | 92.7967 | 92.2619 | 3182 | 72 | 3182 | 247 | 49 | 19.8381 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | homalt | 98.3169 | 96.8553 | 99.8232 | 88.3416 | 1694 | 55 | 1694 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | * | 94.4940 | 97.3629 | 91.7893 | 91.5975 | 2806 | 76 | 2806 | 251 | 35 | 13.9442 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | het | 93.1051 | 98.1443 | 88.5581 | 92.2231 | 1904 | 36 | 1904 | 246 | 34 | 13.8211 | |
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l250_m2_e0 | homalt | 97.8308 | 96.2647 | 99.4487 | 89.6177 | 902 | 35 | 902 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2222 | 95.1087 | 99.4318 | 94.0999 | 175 | 9 | 175 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6102 | 94.2149 | 99.1304 | 93.9633 | 114 | 7 | 114 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0132 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 93.7433 | 58 | 2 | 58 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | * | 96.0366 | 95.1662 | 96.9231 | 95.1304 | 315 | 16 | 315 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | het | 95.1691 | 93.8095 | 96.5686 | 95.2536 | 197 | 13 | 197 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7358 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 94.5523 | 112 | 3 | 112 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | * | 83.3333 | 100.0000 | 71.4286 | 95.6790 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.2381 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | * | 94.8696 | 95.2811 | 94.4616 | 90.2325 | 2746 | 136 | 2746 | 161 | 55 | 34.1615 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | het | 94.4093 | 96.1856 | 92.6975 | 87.4548 | 1866 | 74 | 1866 | 147 | 50 | 34.0136 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | homalt | 95.9430 | 93.3831 | 98.6471 | 93.4664 | 875 | 62 | 875 | 12 | 5 | 41.6667 | |