PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7551-7600 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | hetalt | 97.2704 | 94.7044 | 99.9793 | 59.1395 | 9675 | 541 | 9675 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | homalt | 90.5363 | 98.6254 | 83.6735 | 73.7366 | 287 | 4 | 287 | 56 | 56 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | * | 94.8334 | 92.5834 | 97.1953 | 59.6665 | 27738 | 2222 | 27620 | 797 | 774 | 97.1142 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | het | 86.5457 | 82.4866 | 91.0249 | 77.7276 | 3377 | 717 | 3144 | 310 | 291 | 93.8710 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | hetalt | 96.9242 | 94.0469 | 99.9832 | 52.2156 | 23681 | 1499 | 23796 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | * | HG002compoundhet | homalt | 73.5533 | 99.1254 | 58.4695 | 77.3735 | 680 | 6 | 680 | 483 | 480 | 99.3789 | |
| hfeng-pmm1 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | * | 95.0512 | 93.1226 | 97.0614 | 33.7659 | 2180 | 161 | 2180 | 66 | 62 | 93.9394 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | het | 84.9405 | 90.3704 | 80.1262 | 57.0461 | 366 | 39 | 254 | 63 | 59 | 93.6508 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.7327 | 93.6722 | 100.0000 | 26.4571 | 1806 | 122 | 1918 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | homalt | 84.2105 | 100.0000 | 72.7273 | 75.5556 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | tv | HG002compoundhet | * | 76.9891 | 85.1395 | 70.2629 | 63.5595 | 7597 | 1326 | 7724 | 3269 | 1134 | 34.6895 | |
| ghariani-varprowl | SNP | tv | HG002compoundhet | het | 78.1241 | 90.1776 | 68.9129 | 69.5656 | 4214 | 459 | 4336 | 1956 | 10 | 0.5112 | |
| ghariani-varprowl | SNP | tv | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 862 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | HG002compoundhet | homalt | 83.7163 | 99.8524 | 72.0698 | 50.4793 | 3383 | 5 | 3388 | 1313 | 1124 | 85.6055 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | * | 95.4940 | 92.9354 | 98.1974 | 32.8011 | 8393 | 638 | 8389 | 154 | 150 | 97.4026 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | het | 82.2937 | 79.0888 | 85.7692 | 65.6236 | 677 | 179 | 669 | 111 | 108 | 97.2973 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | hetalt | 97.0967 | 94.3688 | 99.9870 | 24.8266 | 7692 | 459 | 7696 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 67.8049 | 24 | 0 | 24 | 42 | 42 | 100.0000 | |
| hfeng-pmm1 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | HG002compoundhet | * | 83.9950 | 90.1789 | 78.6048 | 56.2142 | 23286 | 2536 | 23381 | 6364 | 715 | 11.2351 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | het | 76.3438 | 87.3819 | 67.7816 | 62.0964 | 12389 | 1789 | 12564 | 5972 | 438 | 7.3342 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | hetalt | 97.1488 | 94.8956 | 99.5116 | 22.8814 | 818 | 44 | 815 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | homalt | 94.8523 | 93.4799 | 96.2656 | 42.1750 | 10079 | 703 | 10002 | 388 | 273 | 70.3608 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | * | 47.5012 | 42.0784 | 54.5285 | 56.5286 | 12605 | 17351 | 24630 | 20539 | 16069 | 78.2365 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | het | 60.5436 | 68.6950 | 54.1215 | 56.4812 | 2811 | 1281 | 24103 | 20432 | 15973 | 78.1764 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 37.0482 | 0.0000 | 0.0000 | 9328 | 15850 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | HG002compoundhet | homalt | 74.7625 | 67.9300 | 83.1230 | 59.6178 | 466 | 220 | 527 | 107 | 96 | 89.7196 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | * | 49.4889 | 36.1782 | 78.2955 | 43.1184 | 3175 | 5601 | 3142 | 871 | 568 | 65.2124 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | het | 14.0448 | 16.8269 | 12.0521 | 71.7051 | 35 | 173 | 37 | 270 | 38 | 14.0741 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | hetalt | 53.1182 | 36.6874 | 96.2041 | 33.7320 | 3132 | 5405 | 3092 | 122 | 97 | 79.5082 | |
| gduggal-snapplat | INDEL | I6_15 | HG002compoundhet | homalt | 4.7937 | 25.8065 | 2.6423 | 56.0714 | 8 | 23 | 13 | 479 | 433 | 90.3967 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | * | 81.2573 | 87.2016 | 76.0717 | 63.0432 | 7781 | 1142 | 7808 | 2456 | 275 | 11.1971 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | het | 71.6435 | 82.9018 | 63.0774 | 69.0248 | 3874 | 799 | 3919 | 2294 | 156 | 6.8004 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | hetalt | 97.1488 | 94.8956 | 99.5116 | 22.8814 | 818 | 44 | 815 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | homalt | 93.1015 | 91.1747 | 95.1114 | 51.4204 | 3089 | 299 | 3074 | 158 | 115 | 72.7848 | |
| gduggal-snapplat | INDEL | I1_5 | HG002compoundhet | * | 48.1810 | 42.2143 | 56.1120 | 77.8637 | 5216 | 7140 | 5412 | 4233 | 851 | 20.1039 | |
| gduggal-snapplat | INDEL | I1_5 | HG002compoundhet | het | 19.8395 | 43.8824 | 12.8171 | 74.6754 | 373 | 477 | 485 | 3299 | 129 | 3.9103 | |
| gduggal-snapplat | INDEL | I1_5 | HG002compoundhet | hetalt | 56.9417 | 41.4601 | 90.8753 | 78.7291 | 4634 | 6543 | 4651 | 467 | 392 | 83.9400 | |
| gduggal-snapplat | INDEL | I1_5 | HG002compoundhet | homalt | 46.8802 | 63.5258 | 37.1467 | 83.7347 | 209 | 120 | 276 | 467 | 330 | 70.6638 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||