PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75551-75600 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | homalt | 31.1712 | 18.4632 | 100.0000 | 97.3922 | 173 | 764 | 173 | 0 | 0 | ||
| dgrover-gatk | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | * | 59.5430 | 42.6717 | 98.4793 | 97.0358 | 2137 | 2871 | 2137 | 33 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | het | 69.6152 | 53.9336 | 98.1544 | 97.0778 | 1755 | 1499 | 1755 | 33 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | homalt | 35.8517 | 21.8411 | 100.0000 | 96.8007 | 382 | 1367 | 382 | 0 | 0 | ||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | * | 97.1095 | 97.3451 | 96.8750 | 94.8855 | 110 | 3 | 186 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | het | 96.7603 | 96.9697 | 96.5517 | 94.2829 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1240 | 2 | 0 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.4795 | 97.7778 | 97.1831 | 95.5514 | 44 | 1 | 69 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | * | 89.3697 | 86.3636 | 92.5926 | 95.3287 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | het | 96.7742 | 100.0000 | 93.7500 | 94.3662 | 14 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.7447 | 0 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.3563 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.4014 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 98.1073 | 0 | 0 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C1_5 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3146 | 0 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e0 | * | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 3 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0156 | 97.8261 | 96.2185 | 95.0365 | 180 | 4 | 229 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | het | 97.1032 | 98.3471 | 95.8904 | 94.6986 | 119 | 2 | 140 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9071 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4929 | 98.3333 | 96.6667 | 95.1561 | 59 | 1 | 87 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | * | 94.7368 | 95.5752 | 93.9130 | 97.5385 | 108 | 5 | 108 | 7 | 1 | 14.2857 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | het | 91.7293 | 92.4242 | 91.0448 | 98.1295 | 61 | 5 | 61 | 6 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m2_e0 | homalt | 98.9011 | 100.0000 | 97.8261 | 95.2675 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 98.6333 | 6 | 2 | 6 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7421 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0583 | 2 | 1 | 2 | 0 | 0 | ||