PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75501-75550 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | * | 93.4524 | 94.8640 | 92.0821 | 97.4260 | 314 | 17 | 314 | 27 | 2 | 7.4074 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | het | 90.9931 | 93.8095 | 88.3408 | 97.8444 | 197 | 13 | 197 | 26 | 1 | 3.8462 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | homalt | 98.6900 | 98.2609 | 99.1228 | 95.6900 | 113 | 2 | 113 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | SNP | * | map_l250_m2_e0 | * | 64.4492 | 47.6728 | 99.4444 | 90.9774 | 3759 | 4126 | 3759 | 21 | 4 | 19.0476 | |
| ckim-isaac | SNP | * | map_l250_m2_e0 | het | 67.0153 | 50.5776 | 99.2819 | 92.1809 | 2627 | 2567 | 2627 | 19 | 2 | 10.5263 | |
| ckim-isaac | SNP | * | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l250_m2_e0 | homalt | 59.1933 | 42.0700 | 99.8233 | 85.8571 | 1130 | 1556 | 1130 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.0099 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 99.3548 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.8333 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e0 | * | 60.1307 | 43.0951 | 99.4396 | 91.3095 | 1242 | 1640 | 1242 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | het | 63.3205 | 46.4948 | 99.2299 | 92.2101 | 902 | 1038 | 902 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 93.7500 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l250_m2_e0 | homalt | 53.0196 | 36.0726 | 100.0000 | 87.3075 | 338 | 599 | 338 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | * | 74.4444 | 59.2920 | 100.0000 | 97.1108 | 67 | 46 | 67 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.9691 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | homalt | 65.6716 | 48.8889 | 100.0000 | 94.1176 | 22 | 23 | 22 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m2_e0 | * | 66.8081 | 50.2995 | 99.4473 | 90.8038 | 2519 | 2489 | 2519 | 14 | 3 | 21.4286 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | het | 69.1244 | 53.0117 | 99.3092 | 92.1654 | 1725 | 1529 | 1725 | 12 | 1 | 8.3333 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 90.4762 | 2 | 3 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m2_e0 | homalt | 62.2886 | 45.2830 | 99.7481 | 85.1339 | 792 | 957 | 792 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 72.7273 | 80.0000 | 66.6667 | 97.9933 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 57.1429 | 66.6667 | 50.0000 | 98.1900 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | * | 96.0725 | 96.0725 | 96.0725 | 96.4988 | 318 | 13 | 318 | 13 | 3 | 23.0769 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | het | 95.7346 | 96.1905 | 95.2830 | 96.8183 | 202 | 8 | 202 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6562 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | homalt | 96.4912 | 95.6522 | 97.3451 | 95.5424 | 110 | 5 | 110 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | * | 59.1976 | 42.3843 | 98.1210 | 97.1166 | 3342 | 4543 | 3342 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | het | 69.2853 | 53.6581 | 97.7552 | 97.1324 | 2787 | 2407 | 2787 | 64 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l250_m2_e0 | homalt | 34.2487 | 20.6627 | 100.0000 | 97.0120 | 555 | 2131 | 555 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | * | 58.5236 | 41.8112 | 97.4919 | 97.2532 | 1205 | 1677 | 1205 | 31 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | het | 68.7313 | 53.1959 | 97.0837 | 97.2198 | 1032 | 908 | 1032 | 31 | 0 | 0.0000 | |