PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75251-75300 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | map_l250_m1_e0 | * | 57.9563 | 41.1520 | 97.9565 | 97.0469 | 2972 | 4250 | 2972 | 62 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | het | 68.0455 | 52.2397 | 97.5648 | 97.0733 | 2484 | 2271 | 2484 | 62 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l250_m1_e0 | homalt | 33.0735 | 19.8132 | 100.0000 | 96.8810 | 488 | 1975 | 488 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | * | 57.0360 | 40.3476 | 97.2678 | 97.1909 | 1068 | 1579 | 1068 | 30 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | het | 67.2754 | 51.5389 | 96.8454 | 97.1535 | 921 | 866 | 921 | 30 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | map_l250_m1_e0 | homalt | 29.3121 | 17.1729 | 100.0000 | 97.3637 | 147 | 709 | 147 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | * | 95.7377 | 95.7377 | 95.7377 | 96.2967 | 292 | 13 | 292 | 13 | 3 | 23.0769 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | het | 95.2880 | 95.7895 | 94.7917 | 96.7022 | 182 | 8 | 182 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1154 | 6 | 0 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | homalt | 96.2963 | 95.4128 | 97.1963 | 95.1496 | 104 | 5 | 104 | 3 | 2 | 66.6667 | |
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | * | 58.4497 | 41.5811 | 98.3471 | 96.9616 | 1904 | 2675 | 1904 | 32 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | het | 68.5076 | 52.6617 | 97.9937 | 97.0232 | 1563 | 1405 | 1563 | 32 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | map_l250_m1_e0 | homalt | 35.0103 | 21.2197 | 100.0000 | 96.6137 | 341 | 1266 | 341 | 0 | 0 | ||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 97.9079 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 57.1429 | 66.6667 | 50.0000 | 97.7528 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 4 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 95.7746 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | * | 98.0711 | 97.9600 | 98.1825 | 89.6431 | 2593 | 54 | 2593 | 48 | 11 | 22.9167 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | het | 97.6809 | 97.8176 | 97.5446 | 90.8347 | 1748 | 39 | 1748 | 44 | 8 | 18.1818 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.6977 | 4 | 0 | 4 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | homalt | 98.8830 | 98.2477 | 99.5266 | 85.6901 | 841 | 15 | 841 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | * | 96.0526 | 95.7377 | 96.3696 | 99.5069 | 292 | 13 | 292 | 11 | 3 | 27.2727 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.3118 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7571 | 106 | 3 | 106 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l250_m1_e0 | * | 97.1429 | 94.4444 | 100.0000 | 96.1798 | 17 | 1 | 17 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.3455 | 11 | 0 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.8333 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 5 | 0 | 5 | 0 | 0 | ||