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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 146 147 148 149 150 151 152 153 154 ... 1720 1721 » 7451-7500 / 86044 show all
jmaeng-gatk	INDEL	*	HG002compoundhet	hetalt	95.3319	91.2708	99.7711	50.5352	22982	2198	23098	53	53	100.0000
jmaeng-gatk	INDEL	*	HG002compoundhet	homalt	60.0968	99.5627	43.0372	84.8886	683	3	683	904	898	99.3363
jmaeng-gatk	INDEL	C6_15	HG002compoundhet	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	HG002compoundhet	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C6_15	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	SNP	ti	HG002compoundhet	*	99.7826	99.8112	99.7541	35.5495	17445	33	17445	43	22	51.1628
jli-custom	SNP	ti	HG002compoundhet	het	99.6793	99.7265	99.6321	39.4553	9479	26	9479	35	14	40.0000
jli-custom	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.4462	577	2	577	0	0
jli-custom	SNP	ti	HG002compoundhet	homalt	99.9121	99.9324	99.8918	30.7138	7389	5	7389	8	8	100.0000
jli-custom	SNP	tv	HG002compoundhet	*	99.6414	99.6526	99.6301	48.9851	8892	31	8889	33	14	42.4242
jli-custom	SNP	tv	HG002compoundhet	het	99.4759	99.5292	99.4226	55.0428	4651	22	4649	27	10	37.0370
jli-custom	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
jli-custom	SNP	tv	HG002compoundhet	homalt	99.8081	99.7934	99.8228	43.2831	3381	7	3380	6	4	66.6667
jmaeng-gatk	INDEL	C1_5	HG002compoundhet	*	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
jmaeng-gatk	INDEL	C1_5	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C1_5	HG002compoundhet	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
jmaeng-gatk	INDEL	C1_5	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jli-custom	SNP	*	HG002compoundhet	*	99.7328	99.7599	99.7058	41.1267	25760	62	25757	76	36	47.3684
jli-custom	SNP	*	HG002compoundhet	het	99.6122	99.6614	99.5631	45.6634	14130	48	14128	62	24	38.7097
jli-custom	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
jli-custom	SNP	*	HG002compoundhet	homalt	99.8794	99.8887	99.8702	35.2217	10770	12	10769	14	12	85.7143
jmaeng-gatk	INDEL	D16_PLUS	HG002compoundhet	*	94.6939	94.1478	95.2463	35.4713	2204	137	2204	110	109	99.0909
jmaeng-gatk	INDEL	D16_PLUS	HG002compoundhet	het	87.0277	99.2593	77.4799	58.6932	402	3	289	84	83	98.8095
jmaeng-gatk	INDEL	D16_PLUS	HG002compoundhet	hetalt	96.2053	93.0498	99.5822	25.8327	1794	134	1907	8	8	100.0000
jmaeng-gatk	INDEL	D16_PLUS	HG002compoundhet	homalt	47.0588	100.0000	30.7692	74.2574	8	0	8	18	18	100.0000
jmaeng-gatk	INDEL	C16_PLUS	HG002compoundhet	*		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	HG002compoundhet	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jmaeng-gatk	INDEL	C16_PLUS	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	HG002compoundhet	*	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
jlack-gatk	INDEL	C1_5	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	HG002compoundhet	hetalt	0.0000	100.0000	0.0000	0.0000	1	0	0	0	0
jlack-gatk	INDEL	C1_5	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D1_5	HG002compoundhet	*	93.7462	92.1291	95.4211	64.7145	11272	963	11274	541	497	91.8669
jlack-gatk	INDEL	D1_5	HG002compoundhet	het	92.3786	97.8009	87.5259	78.5190	1690	38	1691	241	200	82.9876
jlack-gatk	INDEL	D1_5	HG002compoundhet	hetalt	95.0540	90.9554	99.5394	57.6003	9292	924	9293	43	40	93.0233
jlack-gatk	INDEL	D1_5	HG002compoundhet	homalt	69.2124	99.6564	53.0165	77.8632	290	1	290	257	257	100.0000
jlack-gatk	INDEL	*	HG002compoundhet	hetalt	94.2807	89.4162	99.7049	50.9823	22515	2665	22637	67	62	92.5373
jlack-gatk	INDEL	*	HG002compoundhet	homalt	47.4306	99.5627	31.1304	79.5488	683	3	683	1511	1501	99.3382
jlack-gatk	INDEL	C16_PLUS	HG002compoundhet	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	HG002compoundhet	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	HG002compoundhet	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	HG002compoundhet	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	*	92.8541	92.1401	93.5792	35.3980	2157	184	2157	148	143	96.6216
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	het	80.6922	97.5309	68.8119	59.1507	395	10	278	126	121	96.0317
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	hetalt	95.0565	90.9751	99.5213	25.2782	1754	174	1871	9	9	100.0000
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	homalt	55.1724	100.0000	38.0952	66.6667	8	0	8	13	13	100.0000
hfeng-pmm3	SNP	tv	HG002compoundhet	*	97.0510	94.4189	99.8341	47.0669	8425	498	8423	14	7	50.0000
hfeng-pmm3	SNP	tv	HG002compoundhet	het	94.3711	89.5142	99.7852	53.0848	4183	490	4181	9	2	22.2222

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