PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74901-74950 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 60.6061 | 55.5556 | 66.6667 | 97.9812 | 10 | 8 | 10 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 47.6190 | 45.4545 | 50.0000 | 98.1273 | 5 | 6 | 5 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6077 | 5 | 0 | 5 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 43.9560 | 37.7358 | 52.6316 | 97.2333 | 40 | 66 | 40 | 36 | 27 | 75.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 53.5433 | 56.6667 | 50.7463 | 97.1158 | 34 | 26 | 34 | 33 | 26 | 78.7879 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 22.6415 | 13.6364 | 66.6667 | 97.8774 | 6 | 38 | 6 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | * | 93.3423 | 94.4262 | 92.2830 | 95.9948 | 288 | 17 | 287 | 24 | 6 | 25.0000 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | het | 92.0043 | 94.2105 | 89.8990 | 96.4744 | 179 | 11 | 178 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8142 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m1_e0 | homalt | 96.3303 | 96.3303 | 96.3303 | 94.4557 | 105 | 4 | 105 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 7 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | tv | map_l250_m1_e0 | * | 65.7644 | 60.3702 | 72.2172 | 91.9134 | 1598 | 1049 | 1596 | 614 | 128 | 20.8469 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | het | 59.5668 | 53.4415 | 67.2779 | 93.2143 | 955 | 832 | 954 | 464 | 21 | 4.5259 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | homalt | 77.9222 | 74.8832 | 81.2183 | 87.6682 | 641 | 215 | 640 | 148 | 105 | 70.9459 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | * | 68.5054 | 64.2204 | 73.4031 | 91.7933 | 4638 | 2584 | 4631 | 1678 | 322 | 19.1895 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | het | 61.9329 | 56.9506 | 67.8706 | 93.2521 | 2708 | 2047 | 2706 | 1281 | 41 | 3.2006 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | homalt | 80.5510 | 78.2785 | 82.9594 | 86.9401 | 1928 | 535 | 1923 | 395 | 279 | 70.6329 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | * | 70.0357 | 66.4337 | 74.0506 | 91.7565 | 3042 | 1537 | 3042 | 1066 | 196 | 18.3865 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | het | 63.3134 | 59.0633 | 68.2225 | 93.3005 | 1753 | 1215 | 1754 | 817 | 20 | 2.4480 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 82.6087 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | homalt | 81.9434 | 80.0871 | 83.8878 | 86.5926 | 1287 | 320 | 1286 | 247 | 174 | 70.4453 | |
| ciseli-custom | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | * | map_l250_m1_e0 | * | 57.5139 | 51.1475 | 65.6904 | 97.4137 | 156 | 149 | 157 | 82 | 40 | 48.7805 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | het | 57.5615 | 54.7368 | 60.6936 | 97.5902 | 104 | 86 | 105 | 68 | 32 | 47.0588 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | map_l250_m1_e0 | homalt | 59.4286 | 47.7064 | 78.7879 | 96.7977 | 52 | 57 | 52 | 14 | 8 | 57.1429 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 66.7446 | 61.4035 | 73.1034 | 97.1877 | 105 | 66 | 106 | 39 | 12 | 30.7692 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 62.5799 | 57.6577 | 68.4211 | 97.6398 | 64 | 47 | 65 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 76.6355 | 71.9298 | 82.0000 | 95.5791 | 41 | 16 | 41 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 98.3740 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 98.4848 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 98.2456 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 99.6656 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||