PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74451-74500 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | * | 98.5497 | 98.7953 | 98.3053 | 89.3707 | 7135 | 87 | 7135 | 123 | 15 | 12.1951 | |
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | het | 98.0709 | 98.3596 | 97.7838 | 90.2767 | 4677 | 78 | 4677 | 106 | 9 | 8.4906 | |
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | homalt | 99.4730 | 99.6346 | 99.3120 | 87.0152 | 2454 | 9 | 2454 | 17 | 6 | 35.2941 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | * | 96.4286 | 97.3770 | 95.4984 | 94.9050 | 297 | 8 | 297 | 14 | 4 | 28.5714 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | het | 95.5844 | 96.8421 | 94.3590 | 95.3527 | 184 | 6 | 184 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9388 | 6 | 0 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | homalt | 97.7169 | 98.1651 | 97.2727 | 93.5748 | 107 | 2 | 107 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | C16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | SNP | tv | map_l250_m1_e0 | * | 91.7764 | 97.3933 | 86.7721 | 92.6439 | 2578 | 69 | 2578 | 393 | 24 | 6.1069 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | het | 88.8718 | 97.2020 | 81.8567 | 93.7753 | 1737 | 50 | 1737 | 385 | 18 | 4.6753 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | homalt | 98.5303 | 97.8972 | 99.1716 | 86.3357 | 838 | 18 | 838 | 7 | 5 | 71.4286 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | * | 93.2444 | 97.7569 | 89.1302 | 92.5027 | 7060 | 162 | 7060 | 861 | 66 | 7.6655 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | het | 90.7389 | 97.8759 | 84.5721 | 93.7676 | 4654 | 101 | 4654 | 849 | 57 | 6.7138 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 96.4912 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | map_l250_m1_e0 | homalt | 98.5442 | 97.5639 | 99.5443 | 85.9993 | 2403 | 60 | 2403 | 11 | 8 | 72.7273 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 89.4737 | 94.4444 | 85.0000 | 97.2452 | 17 | 1 | 17 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 88.0000 | 100.0000 | 78.5714 | 97.5395 | 11 | 0 | 11 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.7778 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.5357 | 5 | 0 | 5 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3548 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8636 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 98.6631 | 5 | 2 | 5 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 99.2453 | 2 | 2 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I6_15 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.6292 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m1_e0 | * | 96.2233 | 96.0656 | 96.3816 | 95.2500 | 293 | 12 | 293 | 11 | 4 | 36.3636 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | het | 95.8115 | 96.3158 | 95.3125 | 95.5556 | 183 | 7 | 183 | 9 | 2 | 22.2222 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.9487 | 4 | 2 | 4 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2706 | 106 | 3 | 106 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 92.3077 | 96.2264 | 88.6957 | 97.0805 | 102 | 4 | 102 | 13 | 2 | 15.3846 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 88.8889 | 93.3333 | 84.8485 | 97.8138 | 56 | 4 | 56 | 10 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.7033 | 100.0000 | 93.6170 | 94.0806 | 44 | 0 | 44 | 3 | 2 | 66.6667 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | * | 94.0942 | 97.9472 | 90.5329 | 92.4177 | 4485 | 94 | 4485 | 469 | 43 | 9.1684 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | het | 91.8885 | 98.2817 | 86.2762 | 93.7627 | 2917 | 51 | 2917 | 464 | 39 | 8.4052 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 94.4444 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | homalt | 98.5516 | 97.3864 | 99.7451 | 85.8112 | 1565 | 42 | 1565 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 89.6000 | 98.2456 | 82.3529 | 96.3309 | 168 | 3 | 168 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 85.1562 | 98.1982 | 75.1724 | 96.7963 | 109 | 2 | 109 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 3 | 0 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 93.7916 | 56 | 1 | 56 | 0 | 0 | ||